Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LT40_RS19515 Genome accession   NZ_CP009533
Coordinates   4405728..4407323 (-) Length   531 a.a.
NCBI ID   WP_043192821.1    Uniprot ID   A0A089ZRK1
Organism   Pseudomonas rhizosphaerae strain DSM 16299     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4400728..4412323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT40_RS19500 (LT40_19820) - 4402546..4402941 (+) 396 WP_043192818.1 type IV pilin protein -
  LT40_RS19505 (LT40_19825) thiO 4402962..4404062 (+) 1101 WP_043192819.1 glycine oxidase ThiO -
  LT40_RS19510 (LT40_19830) pilR 4404379..4405725 (-) 1347 WP_043192820.1 sigma-54-dependent transcriptional regulator Regulator
  LT40_RS19515 (LT40_19835) pilS 4405728..4407323 (-) 1596 WP_043192821.1 sensor histidine kinase Regulator
  LT40_RS19520 (LT40_19840) - 4407313..4407546 (-) 234 WP_043192822.1 PP0621 family protein -
  LT40_RS19525 (LT40_19845) - 4407920..4408942 (-) 1023 WP_043192824.1 outer membrane protein assembly factor BamD -
  LT40_RS19530 (LT40_19850) rluD 4409093..4410055 (+) 963 WP_043192826.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LT40_RS19535 (LT40_19855) pgeF 4410052..4410789 (+) 738 WP_043192827.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58610.84 Da        Isoelectric Point: 7.8145

>NTDB_id=129905 LT40_RS19515 WP_043192821.1 4405728..4407323(-) (pilS) [Pseudomonas rhizosphaerae strain DSM 16299]
MPAEAQFLGGAQAQRMLRLYHLYRLTIGLSLVLLISSNMDNRLLEVADGELFRAGSWLYLILNILVVVLMGNPRRVLPVF
SLATADVIMLAGLFYAGGGTPSGIGNLMIASVAMGNLLLRGRLGLLIAALATIGIIYLTFYLSISRPAAANDYLQASTLG
VLCFAVWFVVQGLSRLLRTSENLAEQRASDVTSLEALNSLILQRMRTGILVLDTELRVQLANQGALALFGRMTLNGELIA
DHSTDLIERLLQWQTNPALRVKSLKLSPTGPSIQASFIALRRGNEQQQTLVFLEDLSQIAQQAQQLKLAALGRLTASIAH
EIRNPLGAISHAGQLLQESEDLPVADRRLTQIIQDQCKRMNLIIENVLQLSRRRPSAPHPLDLKVWLEKFVSDFRATARP
GQQLHMYVSDGTLETRMDANQLAQVLNNLVENGLRYSAQQQGQAQVWLNLFVEPTNGLPILEVLDDGPGFAADQLQHMFE
PFFTTESNGTGLGLYISRELCESNQAHLDYRAREKGGSCMRITFAHPRKQG

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=129905 LT40_RS19515 WP_043192821.1 4405728..4407323(-) (pilS) [Pseudomonas rhizosphaerae strain DSM 16299]
GTGCCCGCTGAAGCGCAGTTTCTCGGCGGCGCCCAGGCGCAGCGGATGCTGCGCCTGTACCACCTCTACCGCTTGACCAT
CGGCCTGTCGCTGGTCCTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGGAAGTCGCCGATGGCGAGCTGTTTCGCG
CCGGCAGCTGGCTCTACTTGATCCTCAACATCCTGGTCGTGGTGCTGATGGGCAACCCGCGCCGGGTGCTGCCCGTTTTC
AGCTTGGCCACCGCCGACGTGATCATGCTCGCAGGCTTGTTCTATGCCGGTGGCGGTACGCCCAGCGGCATCGGCAACCT
GATGATCGCCTCGGTGGCCATGGGCAACCTGTTGCTGCGCGGCCGCCTCGGCCTGTTGATCGCCGCGCTCGCCACCATTG
GCATCATCTACCTGACGTTCTACCTGAGCATCTCCCGCCCGGCCGCCGCCAACGATTACCTGCAAGCGAGCACCTTGGGC
GTGCTGTGCTTCGCCGTGTGGTTCGTGGTCCAGGGCTTGAGCCGGCTGCTGCGCACCAGCGAGAACCTGGCCGAACAGCG
CGCCAGTGACGTCACCAGCCTGGAAGCCTTGAACTCGCTGATTCTGCAGCGCATGCGCACCGGTATCCTGGTGCTGGACA
CCGAGCTGCGTGTGCAACTGGCCAACCAAGGCGCGCTGGCCCTGTTCGGGCGCATGACGCTCAACGGCGAACTGATCGCC
GACCATTCAACCGACCTGATCGAACGCCTGCTGCAGTGGCAGACCAATCCGGCGCTGCGCGTCAAAAGCCTGAAGCTTTC
GCCGACCGGCCCGTCGATCCAGGCCAGTTTCATTGCCCTGCGCCGTGGCAACGAGCAGCAGCAGACCCTGGTGTTTCTCG
AAGACCTGTCGCAGATCGCGCAGCAAGCACAGCAACTCAAACTGGCTGCACTCGGCCGCCTTACGGCCAGCATCGCTCAT
GAGATCCGCAACCCGCTGGGCGCCATCAGTCACGCCGGGCAGTTGCTGCAGGAGTCCGAAGACCTGCCCGTGGCCGACCG
GCGTTTGACGCAGATCATTCAGGATCAATGCAAACGCATGAACCTGATCATCGAGAACGTGCTGCAACTCTCGCGCCGTC
GCCCAAGTGCTCCGCACCCACTGGACCTCAAGGTCTGGCTGGAAAAGTTCGTCAGCGATTTTCGCGCCACCGCGCGCCCC
GGCCAGCAACTGCACATGTACGTCAGCGACGGCACCCTGGAAACTCGCATGGATGCCAACCAATTGGCCCAGGTGCTGAA
CAATCTGGTCGAAAATGGCCTACGCTACAGCGCCCAGCAGCAGGGGCAGGCACAGGTGTGGTTGAATCTTTTCGTGGAGC
CAACCAACGGCCTGCCGATCCTCGAGGTGCTGGACGACGGCCCTGGCTTTGCCGCCGATCAGTTACAGCACATGTTCGAG
CCTTTCTTCACCACCGAAAGCAACGGCACCGGGCTGGGCCTGTATATTTCCCGCGAGCTGTGCGAAAGCAATCAGGCCCA
CCTAGACTACAGGGCACGTGAAAAAGGGGGGAGTTGCATGCGTATTACCTTCGCCCACCCGCGCAAACAGGGATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089ZRK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.059

99.623

0.608

Multiple sequence alignment