Detailed information NTG0129886

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LT40_RS04835
• Genome accession: NZ_CP009533
• Coordinates: 1074394..1076625 (+)
• Length: 743 a.a.
• NCBI ID: WP_043187146.1
• Uniprot ID: A0A089YMI0
• Organism: Pseudomonas rhizosphaerae strain DSM 16299
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1069394..1081625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT40_RS04810 (LT40_04855)	minC	1069588..1070313 (-)	726	WP_043187137.1	septum site-determining protein MinC	-
LT40_RS04815 (LT40_04860)	-	1070452..1071381 (+)	930	WP_043187139.1	lipid A biosynthesis lauroyl acyltransferase	-
LT40_RS04820 (LT40_04865)	-	1071484..1072263 (-)	780	WP_043187141.1	VacJ family lipoprotein	-
LT40_RS04825 (LT40_04870)	-	1072256..1073554 (-)	1299	WP_043187143.1	serine/threonine protein kinase	-
LT40_RS04830 (LT40_04875)	-	1073734..1074246 (-)	513	WP_043187145.1	DUF2062 domain-containing protein	-
LT40_RS04835 (LT40_04880)	comA	1074394..1076625 (+)	2232	WP_043187146.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LT40_RS04840 (LT40_04885)	exbB	1076706..1077341 (+)	636	WP_043193308.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LT40_RS04845 (LT40_04890)	-	1077338..1077766 (+)	429	WP_043187149.1	ExbD/TolR family protein	-
LT40_RS04850 (LT40_04895)	lpxK	1077766..1078761 (+)	996	WP_043187151.1	tetraacyldisaccharide 4'-kinase	-
LT40_RS04855 (LT40_04900)	-	1078788..1078973 (+)	186	WP_043187152.1	Trm112 family protein	-
LT40_RS04860 (LT40_04905)	kdsB	1078970..1079734 (+)	765	WP_043187155.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LT40_RS04865 (LT40_04910)	murB	1079731..1080753 (+)	1023	WP_043187156.1	UDP-N-acetylmuramate dehydrogenase	-
LT40_RS04870 (LT40_04915)	-	1080808..1081401 (+)	594	WP_043187157.1	nucleotidyltransferase family protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 79638.81 Da
• Isoelectric Point: 10.6239

>NTDB_id=129886 LT40_RS04835 WP_043187146.1 1074394..1076625(+) (comA) [Pseudomonas rhizosphaerae strain DSM 16299]
MRTATLALAMGMVCLRGLPALPSLGWLMAMAAGAALLLAVRRWHCGLFLLGLCWACLHAHWATNEQLAPALDGQTLWLEG
EVVGLPAANGSTVRFELADAWSRRAQLPSHLRLAWYGGPPVASGERWRLAVKLKRPRALVNPGGFDAQAWALAKGVGATG
SVKAGERVRAARLAWRDGLRQRLLAVDSQQQGGTLAALLLGDGSGVSRQQWEVLQATGTVHLLVISGQHVGLLAGMLYGL
VALLARIGCWPARWPWLPCACALAFAGALAYGLLAGFQVPVRRACIMIGLVLLWRLRFRHLGVWWPLLLAFTLVLLVDPL
VSLQPGFWLSFIAVAVLLLTFSGRLGGWRWWQAWTRAQCCVALGLLPVMVALALPVSVSGPLVNLLAVPWISLVVLPMAM
AGAVLLPVPWVGETLLWLAGGALSGLFQWLTWTAEWGPPWLPPGLSPHVWLVLVMGILLLLLPAGVPLRWLGVLMLGLLL
FSPRQAPPAGQADVWVLDVGQGLGVLVRTAHHQLLYDTGPGLGEIDAGASVVVPSLVALGVRRLDAMIISHAHLDHSGGA
GTVLRRLAVSQTLAGEPGSLPAAWHAQPCKPGRSWEWDGVKFVLWRWPSAVPGNPASCVLWVEANGERLLLSGDLDAAAE
KALLASGLPVQANWLQAPHHGSKTSSSKPFLEAVGPHTALISRGHGNTFGHPHAAVLARYRALGITPHDTAEEGALRVRL
GAHQPVDRQRAQRRFWREAPAGL

Nucleotide

• Length: 2232 bp

>NTDB_id=129886 LT40_RS04835 WP_043187146.1 1074394..1076625(+) (comA) [Pseudomonas rhizosphaerae strain DSM 16299]
ATGCGCACAGCGACGTTGGCGCTGGCAATGGGGATGGTGTGTCTGCGCGGGCTGCCGGCATTGCCGTCATTGGGCTGGCT
GATGGCGATGGCTGCAGGAGCAGCGCTGTTGCTGGCCGTGCGCCGCTGGCACTGCGGGCTGTTCCTGCTGGGCCTGTGCT
GGGCCTGCCTGCATGCTCATTGGGCGACGAACGAACAGCTGGCGCCTGCGCTCGACGGGCAGACCCTGTGGCTGGAAGGG
GAGGTGGTGGGGCTGCCGGCGGCCAACGGCAGCACGGTACGCTTCGAACTGGCCGACGCCTGGTCGCGTCGCGCGCAGTT
GCCGTCCCATCTGCGCCTGGCCTGGTATGGCGGTCCGCCGGTGGCCAGTGGCGAACGCTGGCGCCTGGCCGTGAAGCTCA
AGCGCCCACGGGCGTTGGTCAACCCCGGCGGATTCGACGCCCAGGCCTGGGCGCTGGCCAAGGGCGTCGGCGCGACCGGC
AGCGTGAAGGCCGGCGAGCGGGTCCGCGCCGCGCGCCTGGCCTGGCGTGATGGGCTGCGCCAGCGTCTGCTGGCGGTCGA
TAGCCAGCAACAAGGCGGTACCCTGGCCGCATTGCTGCTGGGCGACGGTTCGGGTGTGTCGCGCCAGCAATGGGAGGTGC
TGCAGGCAACGGGGACCGTGCACTTGCTGGTCATTTCCGGCCAGCATGTCGGCTTGCTGGCCGGCATGCTGTATGGCCTG
GTCGCCCTGCTGGCAAGAATCGGCTGCTGGCCCGCCCGTTGGCCGTGGTTGCCCTGCGCCTGTGCACTGGCCTTCGCCGG
CGCCCTGGCGTATGGGCTGCTGGCCGGTTTCCAGGTGCCGGTACGCCGGGCCTGCATCATGATCGGCCTGGTGCTGTTGT
GGCGTCTGCGCTTTCGCCACCTGGGCGTGTGGTGGCCGCTGCTGCTGGCCTTCACACTGGTGCTGCTGGTCGATCCTCTG
GTCAGCCTGCAACCCGGATTCTGGTTGTCGTTCATTGCGGTGGCAGTGTTGCTGCTGACGTTTTCCGGACGTCTGGGCGG
TTGGCGATGGTGGCAGGCCTGGACGCGTGCGCAGTGCTGCGTGGCGCTCGGCCTGCTGCCGGTGATGGTCGCCCTGGCCC
TGCCGGTCAGTGTCAGCGGGCCGCTGGTCAATCTGCTGGCCGTGCCCTGGATCAGCCTCGTGGTACTGCCTATGGCCATG
GCCGGCGCCGTGCTGCTGCCGGTGCCCTGGGTCGGCGAAACCCTGTTGTGGCTGGCCGGCGGTGCTCTGAGCGGTCTGTT
TCAGTGGCTGACCTGGACCGCCGAGTGGGGGCCTCCCTGGTTGCCGCCTGGCTTGTCGCCGCACGTGTGGCTGGTGCTGG
TCATGGGCATCCTGCTGCTGTTGCTGCCGGCCGGGGTCCCGTTGCGTTGGCTGGGCGTGCTGATGCTCGGGCTGCTGCTG
TTCAGCCCGCGCCAGGCACCGCCTGCGGGCCAGGCTGACGTCTGGGTGCTGGATGTCGGCCAGGGGCTGGGCGTGCTGGT
ACGCACCGCCCACCACCAATTGCTCTACGACACAGGTCCCGGGCTGGGCGAAATCGATGCGGGCGCCAGCGTGGTGGTGC
CCAGCCTGGTCGCGTTGGGCGTACGGCGCCTGGATGCGATGATCATCAGTCACGCGCACCTCGACCATTCCGGCGGTGCA
GGCACTGTGCTGCGCCGCCTGGCGGTCTCGCAGACGCTGGCCGGGGAGCCGGGTTCGCTCCCCGCTGCGTGGCATGCACA
GCCTTGCAAGCCCGGTCGCAGTTGGGAATGGGACGGGGTGAAGTTCGTCCTGTGGCGGTGGCCTTCGGCAGTGCCCGGCA
ACCCGGCCTCCTGCGTGTTGTGGGTCGAAGCCAATGGCGAGCGCCTGTTGCTCAGCGGCGATCTCGACGCAGCCGCTGAA
AAGGCCCTGCTTGCCAGCGGTCTTCCAGTCCAGGCGAACTGGCTGCAAGCGCCGCACCATGGCAGCAAGACTTCGTCGAG
CAAGCCGTTCCTGGAAGCCGTAGGTCCGCATACTGCGTTGATCTCGCGGGGCCATGGCAACACCTTCGGTCATCCTCACG
CTGCTGTGCTGGCGCGCTACCGGGCATTGGGCATCACCCCCCACGACACCGCCGAAGAAGGCGCATTGCGCGTGCGGCTG
GGTGCCCATCAGCCCGTGGACCGGCAGCGCGCCCAGCGACGTTTCTGGCGTGAAGCCCCCGCCGGGCTATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

3D structure

• AlphaFold DB: A0A089YMI0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.223	96.77	0.583
comA	Ralstonia pseudosolanacearum GMI1000	34.522	100	0.365