Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LT40_RS04840 Genome accession   NZ_CP009533
Coordinates   1076706..1077341 (+) Length   211 a.a.
NCBI ID   WP_043193308.1    Uniprot ID   A0AAJ6LXL4
Organism   Pseudomonas rhizosphaerae strain DSM 16299     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071706..1082341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT40_RS04825 (LT40_04870) - 1072256..1073554 (-) 1299 WP_043187143.1 serine/threonine protein kinase -
  LT40_RS04830 (LT40_04875) - 1073734..1074246 (-) 513 WP_043187145.1 DUF2062 domain-containing protein -
  LT40_RS04835 (LT40_04880) comA 1074394..1076625 (+) 2232 WP_043187146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LT40_RS04840 (LT40_04885) exbB 1076706..1077341 (+) 636 WP_043193308.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LT40_RS04845 (LT40_04890) - 1077338..1077766 (+) 429 WP_043187149.1 ExbD/TolR family protein -
  LT40_RS04850 (LT40_04895) lpxK 1077766..1078761 (+) 996 WP_043187151.1 tetraacyldisaccharide 4'-kinase -
  LT40_RS04855 (LT40_04900) - 1078788..1078973 (+) 186 WP_043187152.1 Trm112 family protein -
  LT40_RS04860 (LT40_04905) kdsB 1078970..1079734 (+) 765 WP_043187155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LT40_RS04865 (LT40_04910) murB 1079731..1080753 (+) 1023 WP_043187156.1 UDP-N-acetylmuramate dehydrogenase -
  LT40_RS04870 (LT40_04915) - 1080808..1081401 (+) 594 WP_043187157.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.97 Da        Isoelectric Point: 7.4061

>NTDB_id=129887 LT40_RS04840 WP_043193308.1 1076706..1077341(+) (exbB) [Pseudomonas rhizosphaerae strain DSM 16299]
MWELVKSGGWMMLPIIVSSIVALAIIAERLWTLRASRVSPAHLVGQVWRWKKDKQLSKEKLKELRADSPLGEILAAGLAN
SRHGREIMKESIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVIGMIEIFGSFTGGAVSGNPSVMAGGISKALVTTA
SGLIVAIPALFFHRLLQRRIDELVVGMEQEAIKLVEVVQGDREVDLAEEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=129887 LT40_RS04840 WP_043193308.1 1076706..1077341(+) (exbB) [Pseudomonas rhizosphaerae strain DSM 16299]
GTGTGGGAATTGGTTAAGTCTGGCGGCTGGATGATGTTGCCAATCATAGTGAGCTCCATCGTCGCGCTGGCCATCATTGC
CGAGCGCCTGTGGACCTTGCGCGCCAGCCGTGTCTCGCCTGCCCATCTGGTCGGCCAGGTCTGGCGCTGGAAGAAAGACA
AACAGCTGAGCAAGGAAAAGCTCAAGGAACTGCGCGCCGACTCGCCGCTGGGCGAAATCCTGGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAAAGCATCGAGGAAGCGGCCAGCCGGGTCATCCACGAGCTGGAACGCTATAT
CAGCACCCTGGGCACCATCGCTGCGATGGCGCCGCTGCTCGGCCTGCTCGGCACGGTCATCGGCATGATCGAAATCTTCG
GCTCATTCACCGGCGGCGCCGTGAGCGGCAATCCCAGCGTCATGGCCGGCGGCATCTCCAAGGCCCTGGTCACTACCGCT
TCGGGCTTGATCGTGGCCATTCCGGCGCTGTTCTTCCATCGCCTGCTGCAGCGGCGCATCGACGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTCGTGCAGGGTGATCGCGAGGTCGACCTGGCCGAGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.777

100

0.768

Multiple sequence alignment