Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MSVAZ_RS20815 Genome accession   NZ_CP009520
Coordinates   1961557..1962351 (+) Length   264 a.a.
NCBI ID   WP_232316291.1    Uniprot ID   -
Organism   Methanosarcina vacuolata Z-761     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1956557..1967351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSVAZ_RS20205 - 1957934..1958107 (+) 174 WP_157206046.1 hypothetical protein -
  MSVAZ_RS08190 (MSVAZ_1548) - 1958278..1958706 (+) 429 WP_394297486.1 MarR family winged helix-turn-helix transcriptional regulator -
  MSVAZ_RS08195 (MSVAZ_1549) - 1958779..1960518 (+) 1740 WP_048120087.1 ABC transporter ATP-binding protein -
  MSVAZ_RS20810 (MSVAZ_1550) - 1960640..1961424 (+) 785 Protein_1606 ABC transporter ATP-binding protein -
  MSVAZ_RS20815 (MSVAZ_1551) rcrQ 1961557..1962351 (+) 795 WP_232316291.1 ABC transporter ATP-binding protein Regulator
  MSVAZ_RS08205 (MSVAZ_1552) - 1962477..1962986 (-) 510 WP_048120089.1 flavin reductase -
  MSVAZ_RS08210 (MSVAZ_1553) - 1963272..1965650 (-) 2379 WP_048120091.1 PocR ligand-binding domain-containing protein -
  MSVAZ_RS08215 (MSVAZ_1554) - 1966416..1966628 (+) 213 WP_048120094.1 hypothetical protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28962.87 Da        Isoelectric Point: 4.9993

>NTDB_id=129856 MSVAZ_RS20815 WP_232316291.1 1961557..1962351(+) (rcrQ) [Methanosarcina vacuolata Z-761]
MDEEKEKDADNARDIQNIEGNVEIESVNFSYIPGKPVLKEATISAEKGQTIAIVGPTGAGKTTIINLLTRFYGIDDGAIY
IDGQNINAITRKSLRQSISMVLQDTFLFSDTIRENIRYGKLTATDEEVEQAAKLAHAHDFIMQLPQGYDTILSDNGGNLS
QGQRQLLSIARAMIAQSSVLILDEATSSIDTRTELIIQSALLKLMHGKTSFVIAHRLSTIKNADKIIVLDDGRVVETGTH
NELLLSGGFYANLYNSQFKKGMAI

Nucleotide


Download         Length: 795 bp        

>NTDB_id=129856 MSVAZ_RS20815 WP_232316291.1 1961557..1962351(+) (rcrQ) [Methanosarcina vacuolata Z-761]
ATGGACGAAGAAAAAGAAAAGGACGCGGATAATGCCAGAGACATTCAAAACATTGAAGGCAACGTGGAAATAGAATCCGT
TAATTTTTCATACATACCGGGTAAGCCTGTACTTAAAGAAGCAACAATTTCTGCGGAAAAAGGCCAGACGATTGCCATTG
TGGGACCGACTGGTGCAGGCAAAACAACCATTATCAATCTTCTCACCAGGTTTTATGGCATTGATGACGGGGCAATCTAT
ATTGATGGGCAGAATATAAATGCCATTACTCGAAAGAGTCTGCGGCAGTCTATTTCAATGGTACTCCAGGATACTTTTCT
CTTCTCAGACACCATACGCGAGAATATCCGCTATGGCAAGCTGACAGCAACGGACGAAGAAGTTGAACAGGCAGCAAAGC
TGGCACATGCCCATGACTTTATTATGCAACTGCCACAGGGTTATGATACAATTCTTTCTGACAATGGCGGCAACCTTTCA
CAGGGACAGCGGCAATTGCTCAGTATTGCGAGAGCGATGATCGCACAATCTTCTGTGTTGATACTTGATGAAGCGACTTC
TTCAATTGATACACGGACAGAGCTGATTATTCAGAGTGCGCTGCTCAAACTGATGCACGGAAAAACAAGTTTTGTCATCG
CACACCGCCTTTCTACCATCAAAAACGCAGATAAAATTATCGTCTTAGACGACGGAAGAGTAGTAGAAACAGGCACGCAT
AACGAACTGCTTCTTTCGGGCGGTTTTTATGCCAACCTTTACAACAGCCAGTTCAAAAAAGGCATGGCAATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(38-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.817

99.242

0.534
  comA/nlmT Streptococcus mutans UA159

40.625

96.97

0.394
  comA Streptococcus pneumoniae D39

39.608

96.591

0.383
  comA Streptococcus pneumoniae R6

39.608

96.591

0.383
  comA Streptococcus pneumoniae Rx1

39.608

96.591

0.383
  comA Streptococcus mitis NCTC 12261

39.216

96.591

0.379
  comA Streptococcus pneumoniae TIGR4

39.216

96.591

0.379
  comA Streptococcus mitis SK321

38.824

96.591

0.375
  rcrP Streptococcus mutans UA159

38.281

96.97

0.371

Multiple sequence alignment