Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LI89_RS19505 Genome accession   NZ_CP009456
Coordinates   4283121..4283672 (-) Length   183 a.a.
NCBI ID   WP_019080106.1    Uniprot ID   A0A9P1PT83
Organism   Yersinia enterocolitica strain FORC_002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4278121..4288672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI89_RS19490 (LI89_19915) - 4278662..4280311 (-) 1650 WP_019080103.1 Na+/H+ antiporter -
  LI89_RS19495 (LI89_19920) - 4280526..4281893 (-) 1368 WP_046694450.1 NCS2 family permease -
  LI89_RS19500 (LI89_19925) - 4282254..4282925 (-) 672 WP_019080105.1 glutathione S-transferase family protein -
  LI89_RS19505 (LI89_19930) ssb 4283121..4283672 (-) 552 WP_019080106.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LI89_RS19510 (LI89_19935) uvrA 4284076..4286907 (+) 2832 WP_019080107.1 excinuclease ABC subunit UvrA -
  LI89_RS19515 (LI89_19940) - 4286966..4287319 (-) 354 WP_019082203.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19182.21 Da        Isoelectric Point: 4.9567

>NTDB_id=129434 LI89_RS19505 WP_019080106.1 4283121..4283672(-) (ssb) [Yersinia enterocolitica strain FORC_002]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQQASRPAQ
SAPAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=129434 LI89_RS19505 WP_019080106.1 4283121..4283672(-) (ssb) [Yersinia enterocolitica strain FORC_002]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGTTGTTCGGCAAACTAGCGGAAGTTGCTGGTGAGTATTTGCGCAAAGGCTCTCAGGTTTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGTACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAACCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAGCAGGCTTCACGCCCGGCTCAG
TCAGCGCCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.743
  ssb Glaesserella parasuis strain SC1401

55.959

100

0.59
  ssb Neisseria meningitidis MC58

46.409

98.907

0.459
  ssb Neisseria gonorrhoeae MS11

45.604

99.454

0.454

Multiple sequence alignment