Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LK03_RS20630 Genome accession   NZ_CP009455
Coordinates   4567740..4569980 (-) Length   746 a.a.
NCBI ID   WP_038414385.1    Uniprot ID   -
Organism   Pseudomonas cremoricolorata strain ND07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4562740..4574980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK03_RS20595 (LK03_20975) murB 4563113..4564132 (-) 1020 WP_038414374.1 UDP-N-acetylmuramate dehydrogenase -
  LK03_RS20600 (LK03_20980) - 4564129..4564593 (-) 465 WP_038414378.1 low molecular weight protein-tyrosine-phosphatase -
  LK03_RS20605 (LK03_20985) kdsB 4564593..4565357 (-) 765 WP_038414379.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LK03_RS20610 (LK03_20990) - 4565354..4565539 (-) 186 WP_038414380.1 Trm112 family protein -
  LK03_RS20615 (LK03_20995) lpxK 4565581..4566573 (-) 993 WP_038414382.1 tetraacyldisaccharide 4'-kinase -
  LK03_RS20620 (LK03_21000) - 4566573..4567007 (-) 435 WP_038414384.1 biopolymer transporter ExbD -
  LK03_RS20625 (LK03_21005) exbB 4567004..4567639 (-) 636 WP_038414862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LK03_RS20630 (LK03_21010) comA 4567740..4569980 (-) 2241 WP_038414385.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK03_RS22095 - 4570117..4570617 (+) 501 Protein_4093 DUF2062 domain-containing protein -
  LK03_RS20635 (LK03_21015) - 4570627..4571406 (-) 780 WP_038414386.1 ABC transporter permease -
  LK03_RS20640 (LK03_21020) - 4571403..4572335 (-) 933 WP_038414387.1 ABC transporter ATP-binding protein -
  LK03_RS20645 (LK03_21030) - 4572478..4573101 (-) 624 WP_038414388.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80366.21 Da        Isoelectric Point: 10.7605

>NTDB_id=129418 LK03_RS20630 WP_038414385.1 4567740..4569980(-) (comA) [Pseudomonas cremoricolorata strain ND07]
MRTWMMALAAGLLSLRFLPVLPASGALAALLLVAAICLWRRHAVVACVLLGFCWACWSAQQALVDRLSADLDGRTLWLEA
TVIGLPAHTPNGVRFEVEQAQSRRAALPARLQLSWFSGPPVAAGERWRLAVSLKRPQGLLNPHGADREATLLARRIGASG
TVKAGERLSAQSSSWRNALRQRLLGVDALGQQALLSALVLGDGSGISAEQWQVVRDTGAVHLLVISGQHIGLLAGLVYGL
VAMLARLGLWPVRLPWLTWACVLSLSAALGYGWLAGFQVPVQRACLMLAVVLVWRLHFRQLPASVPLLLALNGVLLFEPL
ASLLPGFWLSFGAVATLIYCFAGRLGGWRPWQAWTRAQWVIAVGLLPLLLALGLPVSLSAPLANLLAVPWVSLVVLPLTL
LGTALIWLPGVGEGLLWLAGGALWGLFETLALIAQWRPAWLPAALPWSNWLLVALAAWLILLPRGLPLRVPGALMLLALW
PRLDSVAHGEAEVLQLDVGQGLAVLVRTRHHSLLYDAGPSFGEVDLGEQVVLPTLRKLGVDKLDLLLISHAHADHAGGAL
AIRRVLPVARVVSGEPTAVAPALGAQPCVSDEAWEWDGVHFSLWQWAGADSSNERSCVLRVEAAGERLLLAGDIERGAEQ
AWLARPEAAQVDWLQAPHHGSRSSSTGAFLRVLSPRGVLISRGRGNSFGHPHAQVLARYRHLGMAIHDTALEGALRLRLG
RHGQVSGQRQQRRFWREPVAGSAASP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=129418 LK03_RS20630 WP_038414385.1 4567740..4569980(-) (comA) [Pseudomonas cremoricolorata strain ND07]
ATGCGCACATGGATGATGGCGCTGGCCGCAGGTCTGTTGAGCCTGCGTTTTCTACCCGTTTTGCCTGCAAGTGGCGCGCT
AGCCGCCTTGCTGCTGGTCGCCGCCATTTGCCTGTGGCGCCGGCACGCCGTGGTTGCCTGCGTGTTGCTCGGGTTCTGCT
GGGCTTGTTGGTCAGCCCAGCAGGCGCTGGTCGACCGTTTGTCGGCAGACCTCGATGGGCGCACCCTGTGGCTCGAAGCA
ACGGTGATCGGCTTGCCTGCACACACCCCCAACGGCGTGCGCTTCGAGGTCGAGCAGGCGCAGTCTCGTCGTGCAGCGTT
GCCCGCGCGGCTGCAACTGAGCTGGTTCAGTGGCCCGCCCGTGGCCGCTGGCGAGCGCTGGCGCCTGGCGGTTTCGCTCA
AGCGTCCACAGGGCCTGCTCAACCCCCATGGCGCGGATCGCGAGGCCACTCTGCTGGCCAGGCGCATCGGCGCTTCCGGC
ACGGTCAAAGCCGGTGAACGTCTGAGCGCTCAGTCGAGCAGTTGGCGCAACGCGTTGCGCCAGCGTCTGCTCGGTGTCGA
TGCGCTGGGGCAGCAGGCATTGCTCAGCGCCCTGGTGCTCGGGGACGGCAGTGGCATCAGTGCCGAGCAATGGCAGGTGG
TGCGCGATACCGGCGCCGTGCATCTGCTGGTGATCTCCGGTCAGCATATCGGCCTGCTCGCAGGGCTGGTATACGGGCTG
GTAGCGATGCTGGCGCGCCTGGGCCTGTGGCCAGTGCGCCTGCCGTGGCTGACCTGGGCCTGCGTTCTGTCGCTCAGCGC
AGCGCTGGGCTACGGCTGGCTGGCCGGATTTCAGGTGCCGGTGCAGCGCGCCTGTCTGATGCTTGCCGTGGTGCTGGTCT
GGCGCCTGCACTTTCGACAATTGCCGGCCAGCGTTCCGTTGCTGCTGGCGCTCAACGGTGTGCTGTTGTTCGAGCCGCTG
GCCAGCTTGTTGCCAGGGTTCTGGCTGTCGTTCGGCGCTGTCGCCACGCTGATTTACTGCTTTGCCGGGCGCCTGGGTGG
CTGGCGACCCTGGCAGGCCTGGACGCGTGCGCAGTGGGTGATTGCCGTAGGCCTGCTGCCGCTGTTGCTGGCATTGGGGC
TGCCGGTCAGCCTGAGCGCACCGTTGGCCAATCTGTTGGCCGTGCCTTGGGTGAGCCTGGTGGTGTTGCCGCTGACGCTG
CTCGGCACCGCCTTGATCTGGCTGCCGGGTGTCGGCGAAGGGCTGCTATGGCTGGCAGGCGGCGCATTGTGGGGCTTGTT
CGAAACGCTTGCCCTGATCGCCCAGTGGCGTCCGGCCTGGCTGCCGGCAGCGTTGCCATGGAGTAACTGGCTGCTTGTCG
CCCTCGCCGCATGGCTGATCCTGCTGCCCCGTGGGCTGCCCCTGCGTGTTCCCGGCGCGCTGATGCTGCTGGCACTGTGG
CCACGCCTGGACTCGGTAGCGCACGGAGAAGCCGAGGTGCTGCAACTGGACGTCGGCCAAGGGCTGGCAGTGCTTGTGCG
CACCCGACATCACTCCCTGCTGTATGACGCCGGGCCGTCGTTCGGCGAAGTCGATCTGGGTGAGCAGGTCGTGTTGCCGA
CCTTGCGCAAGTTGGGCGTCGACAAGCTCGACCTGCTGCTGATCAGCCACGCCCACGCCGACCACGCCGGCGGTGCCCTG
GCGATCCGGCGCGTGCTGCCGGTGGCGCGAGTGGTGAGCGGCGAACCGACAGCGGTGGCGCCCGCCCTGGGGGCGCAGCC
TTGCGTGAGCGATGAAGCCTGGGAGTGGGACGGTGTGCACTTTTCCTTATGGCAGTGGGCCGGGGCCGACAGCAGTAACG
AGCGCTCTTGCGTACTGCGGGTCGAAGCGGCAGGCGAGCGCTTGCTGCTGGCCGGAGACATCGAACGTGGCGCCGAGCAG
GCTTGGTTGGCGCGGCCGGAAGCTGCGCAGGTCGACTGGCTGCAGGCCCCCCACCATGGCAGTCGAAGCTCTTCCACTGG
CGCGTTCCTGCGTGTGTTGTCACCCCGCGGCGTATTGATTTCCCGTGGCCGTGGCAACAGCTTCGGTCATCCCCATGCGC
AGGTGCTGGCGCGCTATCGCCACTTGGGCATGGCCATTCACGATACAGCGCTGGAGGGGGCGCTACGGCTGCGCTTGGGA
CGGCACGGGCAGGTCAGCGGGCAACGCCAGCAACGGCGCTTCTGGCGCGAGCCTGTGGCTGGCAGTGCAGCGTCGCCCTG
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.858

96.381

0.558
  comA Ralstonia pseudosolanacearum GMI1000

35.687

100

0.373

Multiple sequence alignment