Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LK03_RS20625 Genome accession   NZ_CP009455
Coordinates   4567004..4567639 (-) Length   211 a.a.
NCBI ID   WP_038414862.1    Uniprot ID   A0A089WSK4
Organism   Pseudomonas cremoricolorata strain ND07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4562004..4572639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK03_RS20595 (LK03_20975) murB 4563113..4564132 (-) 1020 WP_038414374.1 UDP-N-acetylmuramate dehydrogenase -
  LK03_RS20600 (LK03_20980) - 4564129..4564593 (-) 465 WP_038414378.1 low molecular weight protein-tyrosine-phosphatase -
  LK03_RS20605 (LK03_20985) kdsB 4564593..4565357 (-) 765 WP_038414379.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LK03_RS20610 (LK03_20990) - 4565354..4565539 (-) 186 WP_038414380.1 Trm112 family protein -
  LK03_RS20615 (LK03_20995) lpxK 4565581..4566573 (-) 993 WP_038414382.1 tetraacyldisaccharide 4'-kinase -
  LK03_RS20620 (LK03_21000) - 4566573..4567007 (-) 435 WP_038414384.1 biopolymer transporter ExbD -
  LK03_RS20625 (LK03_21005) exbB 4567004..4567639 (-) 636 WP_038414862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LK03_RS20630 (LK03_21010) comA 4567740..4569980 (-) 2241 WP_038414385.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LK03_RS22095 - 4570117..4570617 (+) 501 Protein_4093 DUF2062 domain-containing protein -
  LK03_RS20635 (LK03_21015) - 4570627..4571406 (-) 780 WP_038414386.1 ABC transporter permease -
  LK03_RS20640 (LK03_21020) - 4571403..4572335 (-) 933 WP_038414387.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22891.17 Da        Isoelectric Point: 7.3616

>NTDB_id=129417 LK03_RS20625 WP_038414862.1 4567004..4567639(-) (exbB) [Pseudomonas cremoricolorata strain ND07]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYVSTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEISGAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=129417 LK03_RS20625 WP_038414862.1 4567004..4567639(-) (exbB) [Pseudomonas cremoricolorata strain ND07]
GTGTGGGAATTGGTCAAGTCGGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGT
GGAGCGGTTGTGGACCTTGCGCGCCAGCCGTGTCACGCCCCCCCACCTGCTCGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGCGACAAGCTCAAGGCGCTGCGGGCTGACTCGCCGCTGGGGGAAATTCTCGCGGCGGGGCTGGCCAAC
TCCCGGCACGGCCGGGAAATCATGAAAGAATGCATCGAGGAAGCGGCGTCGCGGGTGATCCATGAACTGGAGCGCTACGT
CAGCACCCTCGGCACCATCGCTGCCATGGCTCCGCTGCTGGGGCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCTCCGTACTCGCCGGCGGTATCTCCAAGGCGCTGGTCACCACCGCC
GCAGGCCTGATGGTGGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGCTGCAGGGTGATCGCGAAGTGGAAATCAGCGGAGCCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment