Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LH20_RS21015 Genome accession   NZ_CP009452
Coordinates   4328066..4328590 (-) Length   174 a.a.
NCBI ID   WP_053555902.1    Uniprot ID   A0A0M5IK47
Organism   Sphingopyxis sp. 113P3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4323066..4333590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH20_RS20990 (LH20_21340) - 4324616..4325074 (+) 459 WP_053556429.1 thioesterase family protein -
  LH20_RS20995 (LH20_21345) - 4325324..4325797 (+) 474 WP_053555899.1 hypothetical protein -
  LH20_RS21000 (LH20_21350) ribD 4325833..4326777 (+) 945 WP_053556430.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  LH20_RS21005 (LH20_21355) - 4326784..4327413 (+) 630 WP_053555900.1 riboflavin synthase -
  LH20_RS21010 (LH20_21360) - 4327460..4327951 (-) 492 WP_053555901.1 MmcB family DNA repair protein -
  LH20_RS21015 (LH20_21365) ssb 4328066..4328590 (-) 525 WP_053555902.1 single-stranded DNA-binding protein Machinery gene
  LH20_RS21020 (LH20_21370) - 4328622..4330493 (-) 1872 WP_053555903.1 ferrous iron transporter B -
  LH20_RS21025 (LH20_21375) - 4330490..4330744 (-) 255 WP_053555904.1 FeoA family protein -
  LH20_RS21030 (LH20_21380) - 4330784..4331455 (-) 672 WP_053555905.1 COQ9 family protein -
  LH20_RS21035 (LH20_21385) - 4331455..4332363 (-) 909 WP_053555906.1 DMT family transporter -
  LH20_RS21040 (LH20_21390) - 4332478..4333563 (+) 1086 WP_053555907.1 alkene reductase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18251.94 Da        Isoelectric Point: 5.0006

>NTDB_id=129372 LH20_RS21015 WP_053555902.1 4328066..4328590(-) (ssb) [Sphingopyxis sp. 113P3]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSESWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEVVVAGMGGSLTMLDGAPGGGGSRTSGDSWNQGGGSSGGWDQGGSSGGGWNQGGGSSGGG
RPPFDDDLDDDVPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=129372 LH20_RS21015 WP_053555902.1 4328066..4328590(-) (ssb) [Sphingopyxis sp. 113P3]
ATGGCTGGCAGCGTCAACAAGGTTATTCTCATCGGCAATCTGGGTGCCGATCCTGAAATCAAGTCGTTCCAGAACGGTGG
CAAGATCGCGAATATCCGCATCGCGACCTCCGAGAGCTGGAAGGATCGCATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTCGTCATCAATGGCGACGGGCTGGTCGGCGTGGTCGAACGTTACCTCAAAAAGGGGTCGAAGGTTTATATC
GAAGGAAGCCTGCGCACGCGTAAGTGGCAGGACCGCGACGGCAACGACCGCTACACGACCGAGGTCGTGGTCGCCGGCAT
GGGAGGCTCGCTGACGATGCTCGACGGCGCGCCCGGCGGCGGCGGATCGCGCACGAGCGGGGATAGCTGGAACCAGGGCG
GCGGCTCGAGCGGCGGCTGGGATCAGGGCGGAAGCTCGGGTGGCGGCTGGAATCAGGGCGGCGGCAGTTCGGGTGGCGGA
CGGCCGCCCTTCGACGATGATCTCGACGACGACGTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M5IK47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.974

100

0.489
  ssb Vibrio cholerae strain A1552

48.555

99.425

0.483
  ssb Neisseria meningitidis MC58

38.547

100

0.397
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.391

Multiple sequence alignment