Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LG71_RS05545 | Genome accession | NZ_CP009450 |
| Coordinates | 1183709..1184230 (+) | Length | 173 a.a. |
| NCBI ID | WP_043081684.1 | Uniprot ID | - |
| Organism | Pluralibacter gergoviae strain FB2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1178709..1189230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG71_RS05525 (LG71_05600) | aphA | 1179035..1179742 (+) | 708 | WP_043086353.1 | acid phosphatase AphA | - |
| LG71_RS05530 (LG71_05605) | - | 1179853..1180269 (+) | 417 | WP_043081679.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| LG71_RS05535 (LG71_05610) | - | 1180272..1180625 (+) | 354 | WP_043081680.1 | MmcQ/YjbR family DNA-binding protein | - |
| LG71_RS05540 (LG71_05615) | uvrA | 1180626..1183451 (-) | 2826 | WP_043081682.1 | excinuclease ABC subunit UvrA | - |
| LG71_RS05545 (LG71_05620) | ssb | 1183709..1184230 (+) | 522 | WP_043081684.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| LG71_RS05550 (LG71_05625) | - | 1184810..1185304 (+) | 495 | WP_043081685.1 | hypothetical protein | - |
| LG71_RS05555 (LG71_05630) | tssJ | 1185329..1185835 (+) | 507 | WP_043081689.1 | type VI secretion system lipoprotein TssJ | - |
| LG71_RS05560 (LG71_05635) | tssK | 1185858..1187201 (+) | 1344 | WP_043081691.1 | type VI secretion system baseplate subunit TssK | - |
| LG71_RS05565 (LG71_05640) | - | 1187220..1188485 (+) | 1266 | WP_043081692.1 | DotU family type VI secretion system protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18614.66 Da Isoelectric Point: 5.2358
>NTDB_id=129327 LG71_RS05545 WP_043081684.1 1183709..1184230(+) (ssb) [Pluralibacter gergoviae strain FB2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVTNIRIATSESWRDKASGEMKEVTEWHTVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGNDRYSTEIVVGMNGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSAPAPS
NEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVTNIRIATSESWRDKASGEMKEVTEWHTVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGNDRYSTEIVVGMNGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSAPAPS
NEPPMDFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=129327 LG71_RS05545 WP_043081684.1 1183709..1184230(+) (ssb) [Pluralibacter gergoviae strain FB2]
ATGGCCAGCAGAGGCGTAAACAAGGTAATTCTCGTCGGTAATCTGGGTCAGGACCCGGAAGTCCGCTATATGCCAAGCGG
CGGGGCCGTGACGAACATTCGTATCGCCACCTCCGAATCCTGGCGCGACAAGGCGTCCGGCGAAATGAAAGAAGTGACCG
AATGGCACACCGTGGTGATGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTGTACATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGAGCGGCAACGATCGCTACTCGACCGAAATCGTCGTCGGCATGAA
CGGCGTGATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTGGTCAGCAGCAGGGCGGCTGGGGCCAGC
CGCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCTCCGCGCCGGCGCCGTCC
AACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTAATTCTCGTCGGTAATCTGGGTCAGGACCCGGAAGTCCGCTATATGCCAAGCGG
CGGGGCCGTGACGAACATTCGTATCGCCACCTCCGAATCCTGGCGCGACAAGGCGTCCGGCGAAATGAAAGAAGTGACCG
AATGGCACACCGTGGTGATGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTGTACATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGAGCGGCAACGATCGCTACTCGACCGAAATCGTCGTCGGCATGAA
CGGCGTGATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTGGTCAGCAGCAGGGCGGCTGGGGCCAGC
CGCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCTCCGCGCCGGCGCCGTCC
AACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.111 |
100 |
0.792 |
| ssb | Glaesserella parasuis strain SC1401 |
58.242 |
100 |
0.613 |
| ssb | Neisseria meningitidis MC58 |
47.753 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
100 |
0.491 |