Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M444_RS24935 Genome accession   NZ_CP011664
Coordinates   5689031..5690506 (+) Length   491 a.a.
NCBI ID   WP_037798211.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5684031..5695506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS24925 (M444_24910) - 5685704..5687446 (-) 1743 WP_008737572.1 hypothetical protein -
  M444_RS24930 (M444_24915) - 5687443..5688981 (-) 1539 WP_008737574.1 site-specific integrase -
  M444_RS24935 (M444_24920) comM 5689031..5690506 (+) 1476 WP_037798211.1 ATP-binding protein Machinery gene
  M444_RS24940 (M444_24925) dprA 5690557..5691738 (+) 1182 WP_037799889.1 DNA-processing protein DprA -
  M444_RS24945 (M444_24930) whiG 5691948..5692784 (+) 837 WP_008737580.1 RNA polymerase sigma factor WhiG -
  M444_RS24950 (M444_24935) - 5692846..5693403 (+) 558 WP_008737581.1 TetR/AcrR family transcriptional regulator -
  M444_RS40090 - 5693524..5693862 (-) 339 Protein_4998 M23 family metallopeptidase -
  M444_RS24955 (M444_24940) rpsB 5694114..5695037 (+) 924 WP_037791046.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 50525.00 Da        Isoelectric Point: 7.4897

>NTDB_id=129190 M444_RS24935 WP_037798211.1 5689031..5690506(+) (comM) [Streptomyces sp. Mg1]
MNSGAAWPQKKLTVGLSPASVPKGGAGFDLAVAAAVLGAAEVVDPGAIADLVLIGELGLDGRVRPVRGILPAVLAAAEAG
YRQVVVPQQCAAEAALVPDVSVLGVRSLRQLIAVLADGVVPEEEPPDPPGRPDPMLAGLFVPGAGLGTGLARGAGSGGEA
PDHPDLSDVAGQHAARRALEVAAAGGHHLFLSGPPGAGKTMLAERLPWILPPLTRQDSLEVTAVHSVAGILPPGEPLVTK
PPYCAPHHSATMQSLVGGGAGVPRPGAVSLAHRGVLFLDEAAEFSAKALDALRQPLESGHVVIARAAGVVRLPARFLMLL
AANPCPCGRHNLQGAGCECPASVVRRYQARLSGPLLDRVDLRVEVEPVTRSDLLGRGGRGEDTATVADRVREARARAAAR
LADTPWRLNSEVPGHELRTRWPAAPGALAQAERDLERGLLTARGLDRVLRVAWTVADLRGRDRPDALDVAVALELRTGVA
RGATLPSGGGS

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=129190 M444_RS24935 WP_037798211.1 5689031..5690506(+) (comM) [Streptomyces sp. Mg1]
GTGAACTCCGGCGCCGCCTGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCCGCCTCCGTACCCAAGGGCGGCGCGGG
CTTCGACCTGGCGGTGGCCGCCGCCGTGCTGGGCGCCGCCGAGGTGGTCGACCCCGGAGCCATCGCCGACCTCGTGCTCA
TCGGGGAGCTCGGCCTGGACGGCCGGGTGCGTCCCGTGCGCGGCATCCTCCCGGCGGTCCTCGCCGCCGCCGAAGCCGGG
TACCGGCAGGTGGTGGTCCCGCAGCAGTGCGCCGCCGAGGCCGCGCTGGTCCCCGACGTGTCGGTGCTCGGGGTGCGCAG
CCTGCGGCAGTTGATCGCCGTGCTGGCCGACGGGGTGGTGCCCGAGGAGGAACCCCCGGATCCGCCGGGGCGACCGGATC
CGATGCTGGCCGGCCTGTTCGTCCCCGGCGCCGGACTCGGCACGGGCCTGGCCCGGGGCGCGGGGAGCGGGGGCGAGGCC
CCGGACCACCCCGACCTGTCCGATGTCGCCGGACAGCACGCCGCGCGCCGGGCCCTGGAGGTGGCCGCCGCCGGGGGACA
CCACCTCTTCCTCAGCGGGCCACCGGGCGCGGGCAAGACGATGCTGGCCGAACGGCTCCCGTGGATCCTGCCGCCGCTCA
CCCGGCAGGACTCGCTGGAGGTCACCGCCGTCCACTCGGTCGCGGGCATCCTCCCGCCCGGCGAACCGCTGGTCACCAAG
CCCCCGTACTGCGCCCCGCACCACTCGGCGACCATGCAGTCGCTGGTCGGGGGCGGAGCCGGGGTCCCCAGGCCCGGGGC
GGTCTCCCTGGCCCATCGCGGCGTCCTCTTCCTGGACGAGGCCGCCGAGTTCAGCGCCAAGGCCCTGGACGCGCTGCGCC
AGCCCCTGGAGTCGGGGCACGTGGTGATCGCCCGGGCCGCCGGGGTGGTGCGGCTGCCGGCCAGGTTCCTGATGCTGCTC
GCGGCCAACCCCTGCCCGTGCGGGAGGCACAACCTGCAAGGGGCCGGCTGTGAATGCCCGGCCTCCGTGGTGCGGCGTTA
CCAGGCGCGGCTGTCCGGCCCGCTGCTGGACCGGGTGGACCTGCGGGTGGAGGTCGAACCGGTCACCCGGTCCGACCTGC
TGGGCCGGGGCGGCCGCGGGGAGGACACGGCGACGGTCGCCGACCGCGTGCGGGAAGCCAGGGCCCGGGCCGCGGCGCGG
CTCGCCGACACCCCGTGGCGGCTCAACTCCGAGGTGCCCGGGCACGAACTGAGGACCCGCTGGCCGGCCGCCCCCGGAGC
GCTGGCCCAGGCCGAACGGGACCTGGAGCGGGGGCTGCTCACCGCGCGCGGGCTGGACCGGGTGTTGCGGGTCGCCTGGA
CCGTGGCCGACCTCCGGGGCCGCGACCGCCCCGACGCGCTCGACGTGGCGGTGGCCCTGGAGCTGCGCACCGGCGTCGCC
CGCGGCGCGACCCTGCCCTCCGGAGGCGGATCGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(165-371)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(380-476)

Subunit ChlI of Mg-chelatase (ChlI)

(2-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

38.797

98.167

0.381
  comM Vibrio campbellii strain DS40M4

37.759

98.167

0.371
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.13

93.686

0.367
  comM Vibrio cholerae strain A1552

39.13

93.686

0.367
  comM Glaesserella parasuis strain SC1401

37.006

97.963

0.363
  comM Haemophilus influenzae Rd KW20

36.952

97.556

0.36