Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M444_RS12230 Genome accession   NZ_CP011664
Coordinates   2865272..2867005 (+) Length   577 a.a.
NCBI ID   WP_008739210.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2860272..2872005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS12200 (M444_12175) - 2861514..2862323 (+) 810 WP_234008809.1 leucine-rich repeat domain-containing protein -
  M444_RS12220 (M444_12195) - 2863287..2863598 (+) 312 WP_037791765.1 hypothetical protein -
  M444_RS12225 (M444_12200) - 2863675..2865123 (+) 1449 WP_037797571.1 FGGY family carbohydrate kinase -
  M444_RS12230 (M444_12205) rcrP 2865272..2867005 (+) 1734 WP_008739210.1 ABC transporter ATP-binding protein Regulator
  M444_RS12235 (M444_12210) rcrQ 2867002..2868924 (+) 1923 WP_008739212.1 ABC transporter ATP-binding protein Regulator
  M444_RS12240 (M444_12215) - 2869021..2870145 (-) 1125 WP_047960568.1 RNA polymerase sigma factor -
  M444_RS12245 (M444_12220) - 2870318..2871025 (-) 708 WP_008739216.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62441.42 Da        Isoelectric Point: 5.0736

>NTDB_id=129151 M444_RS12230 WP_008739210.1 2865272..2867005(+) (rcrP) [Streptomyces sp. Mg1]
MLIRLLRTHLGPYRKPIALLVLLQLLQTSATLYLPTLNADIIDKGVVNGDTGYILRFGALMLGVSLVQLGCNIGAVYFGA
RTAAAVGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVQLSGV
LLAVVPVLGVSVGAIVFKTRPLFRQMQERLDTVNRVLREQITGNRVIRAFVRDEYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PTDPVTKLLRRGSLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWQALEVAQAKDFVSELEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETENATVVIVAQRVSTIRDADRIIVLDEGEVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=129151 M444_RS12230 WP_008739210.1 2865272..2867005(+) (rcrP) [Streptomyces sp. Mg1]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCCGTACCGGAAACCGATCGCCCTCCTGGTCCTGCTCCAGCTCCTGCA
GACCAGCGCGACCCTCTACCTCCCGACGCTGAACGCCGACATCATCGACAAGGGTGTGGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCTCTCATGCTCGGTGTCTCGCTCGTCCAGCTCGGCTGCAACATCGGCGCCGTCTACTTCGGCGCC
CGCACCGCGGCGGCCGTCGGCCGGGACGTCCGTGCCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGGGAGCTGGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACAAACGACGTCCAACAGGTCCAGATGCTGGTCCTGATGACCTTCA
CCCTGATGGTCTCCGCCCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCCCTCGACGTACAGCTGTCGGGCGTG
CTGCTCGCGGTCGTGCCCGTGCTCGGCGTCTCGGTCGGCGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGGCAGATGCA
GGAGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGAAGGACCGCTTCCGGGAGGCCAACGCCGACCTCACGGGCGTCTCGCTGGCCGCCGGCAAGCTGCTGGCCCTG
ATGTTCCCCACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCGTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCACCGACCCGGTCACGAAGCTCCTGCGCCGCGGCAGCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCCGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTACGC
CGCCTGGACCCGGAGCTGCTGGCGAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGAACCGTCGCGTC
CAACCTGCGCTACGGGCGTCCGGACGCCTCCGACGAGGAGCTGTGGCAGGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGTCCGAGCTGGAGGGCGGCCTCGACGCACCCGTCACCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGGCTG
GCGATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGGCCCGCGAGACCGAGAACGCGACGGTGGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GTGACGCCGACCGCATCATCGTCCTCGACGAGGGCGAGGTCGTGGGCGAGGGGCGCCATCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.574

0.393

Multiple sequence alignment