Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LC14_RS09690 Genome accession   NZ_CP009421
Coordinates   1859621..1860085 (-) Length   154 a.a.
NCBI ID   WP_011798959.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3683     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1859050..1870136 1859621..1860085 within 0


Gene organization within MGE regions


Location: 1859050..1870136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS09690 (LC14_10255) comE 1859621..1860085 (-) 465 WP_011798959.1 ComEA family DNA-binding protein Machinery gene
  LC14_RS09725 (LC14_10290) - 1865884..1866690 (-) 807 WP_002221447.1 inner membrane protein YpjD -
  LC14_RS09730 (LC14_10295) ffh 1866910..1868280 (+) 1371 WP_002221448.1 signal recognition particle protein -
  LC14_RS09735 (LC14_10300) dsbA2 1868611..1869306 (-) 696 WP_002215704.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LC14_RS09740 (LC14_10305) - 1869477..1870136 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16563.76 Da        Isoelectric Point: 10.8773

>NTDB_id=129151 LC14_RS09690 WP_011798959.1 1859621..1860085(-) (comE) [Neisseria meningitidis strain NM3683]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=129151 LC14_RS09690 WP_011798959.1 1859621..1860085(-) (comE) [Neisseria meningitidis strain NM3683]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment