Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M444_RS12235 Genome accession   NZ_CP011664
Coordinates   2867002..2868924 (+) Length   640 a.a.
NCBI ID   WP_008739212.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862002..2873924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS12220 (M444_12195) - 2863287..2863598 (+) 312 WP_037791765.1 hypothetical protein -
  M444_RS12225 (M444_12200) - 2863675..2865123 (+) 1449 WP_037797571.1 FGGY family carbohydrate kinase -
  M444_RS12230 (M444_12205) rcrP 2865272..2867005 (+) 1734 WP_008739210.1 ABC transporter ATP-binding protein Regulator
  M444_RS12235 (M444_12210) rcrQ 2867002..2868924 (+) 1923 WP_008739212.1 ABC transporter ATP-binding protein Regulator
  M444_RS12240 (M444_12215) - 2869021..2870145 (-) 1125 WP_047960568.1 RNA polymerase sigma factor -
  M444_RS12245 (M444_12220) - 2870318..2871025 (-) 708 WP_008739216.1 ElyC/SanA/YdcF family protein -
  M444_RS12250 (M444_12225) - 2871386..2872105 (+) 720 WP_047960569.1 CbiX/SirB N-terminal domain-containing protein -
  M444_RS12255 (M444_12230) - 2872163..2873500 (+) 1338 WP_008739244.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69104.71 Da        Isoelectric Point: 5.5674

>NTDB_id=129152 M444_RS12235 WP_008739212.1 2867002..2868924(+) (rcrQ) [Streptomyces sp. Mg1]
MSGPGGRMMMGPNERSLDFKASGQRLLKQLTQDRAKLWGMVVAVVGSVGCAVVGPKILGQATDLVFAGIVGRQMPAGVTK
QQALDKLRADGHGGMADMLSGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQGKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKKS
QPQFVAQWKTTGTLNAHIEEMYSGHNLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAREQEPDVEVPERPELLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMTREELRTGIGMVLQDTWL
FGGTIAENIAYGAAREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGSHEELLTADGAYARLYTAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=129152 M444_RS12235 WP_008739212.1 2867002..2868924(+) (rcrQ) [Streptomyces sp. Mg1]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGACCGAACGAGCGGTCCCTGGACTTCAAGGCTTCGGGCCAACGGCTGCT
GAAGCAGCTCACGCAGGACCGGGCCAAGCTGTGGGGCATGGTCGTGGCGGTCGTCGGCAGCGTCGGCTGCGCGGTCGTCG
GGCCGAAGATCCTCGGGCAGGCCACCGACCTGGTGTTCGCGGGGATCGTGGGGCGGCAGATGCCGGCCGGCGTCACCAAG
CAGCAGGCGCTGGACAAGCTGCGCGCGGACGGTCACGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CCAGGGCATCGACTTCGGGGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACGCTGGCGGGTCTGCTGATGC
TGGTGGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAAAAGCGCGGCGAGGTCCTGAGCCGGGCCACGAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGGCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGGTGTCGGTGTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACCACCGGCACGCTGAACGCGCACATCGAGGAGATGTACTCGGGCCACAACCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCTGCGGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATAATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATCGCGGTGGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCGGGAGCAGGAGCCGGACGTCGAGGTCCCGGAGCGCCCGGAGCTGCTGCGCGGGCAGGTCACCCTCGACAAGGTG
GCGTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTGTCGCTGACGGTGGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTCGTCAACCTCTTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCGCCC
TGGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCACGGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGGGCGGCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCCGACCGGTTCGTCCGCACCCTGCCGGACGGTTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCCGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCGTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCTCGC
ACGAGGAGCTGCTGACCGCGGACGGCGCCTACGCGCGCCTGTACACGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.365

94.063

0.38

Multiple sequence alignment