Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LA58_RS04740 Genome accession   NZ_CP009420
Coordinates   916172..916645 (+) Length   157 a.a.
NCBI ID   WP_002248019.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3682     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911172..921645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA58_RS04715 (LA58_04980) dnaB 911627..913033 (+) 1407 WP_002220671.1 replicative DNA helicase -
  LA58_RS04720 (LA58_04985) pilH 913342..914016 (+) 675 WP_002247806.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LA58_RS04725 (LA58_04990) pilV 914040..914651 (+) 612 WP_002247807.1 type IV pilus modification protein PilV Machinery gene
  LA58_RS04730 (LA58_04995) pilJ 914648..915589 (+) 942 WP_041423115.1 PilW family protein Machinery gene
  LA58_RS04735 (LA58_05000) pilK 915568..916167 (+) 600 WP_002238455.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LA58_RS04740 (LA58_05005) pilX 916172..916645 (+) 474 WP_002248019.1 PilX family type IV pilin Machinery gene
  LA58_RS04750 (LA58_05015) - 918680..919108 (-) 429 Protein_894 AzlC family ABC transporter permease -
  LA58_RS04755 (LA58_05020) dut 919251..919703 (+) 453 WP_002220679.1 dUTP diphosphatase -
  LA58_RS04760 (LA58_05025) dapC 919779..920966 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  LA58_RS15030 - 921054..921179 (+) 126 Protein_897 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17388.15 Da        Isoelectric Point: 9.7122

>NTDB_id=129095 LA58_RS04740 WP_002248019.1 916172..916645(+) (pilX) [Neisseria meningitidis strain NM3682]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQVILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDKEKSRAYSLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=129095 LA58_RS04740 WP_002248019.1 916172..916645(+) (pilX) [Neisseria meningitidis strain NM3682]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGGTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATAAGGAAAAATCAAGGGCATACAGCTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGTGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTATCCGCAGATGCCGGCTGCGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

91.083

100

0.911
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

Multiple sequence alignment