Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ABO05_RS04960 Genome accession   NZ_CP011535
Coordinates   975942..977012 (+) Length   356 a.a.
NCBI ID   WP_023079834.1    Uniprot ID   Q48TG2
Organism   Streptococcus pyogenes strain M28PF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 970942..982012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABO05_RS04940 (ABO05_04940) - 971934..972632 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  ABO05_RS04945 (ABO05_04945) - 972730..973062 (+) 333 WP_002989745.1 putative DNA-binding protein -
  ABO05_RS04950 (ABO05_04950) ffh 973077..974639 (+) 1563 WP_021340793.1 signal recognition particle protein -
  ABO05_RS04955 (ABO05_04955) - 974774..975472 (-) 699 WP_002993300.1 S24 family peptidase -
  ABO05_RS04960 (ABO05_04960) xerS 975942..977012 (+) 1071 WP_023079834.1 tyrosine recombinase XerS Machinery gene
  ABO05_RS04965 (ABO05_04965) - 977711..978193 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  ABO05_RS04970 (ABO05_04970) citC 978282..979334 (+) 1053 WP_011284808.1 [citrate (pro-3S)-lyase] ligase -
  ABO05_RS04975 (ABO05_04975) - 979444..980838 (-) 1395 WP_014635474.1 oxaloacetate decarboxylase subunit alpha -
  ABO05_RS04980 (ABO05_04980) citX 980853..981431 (-) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41457.54 Da        Isoelectric Point: 9.5552

>NTDB_id=129094 ABO05_RS04960 WP_023079834.1 975942..977012(+) (xerS) [Streptococcus pyogenes strain M28PF1]
MRRELLLEKIETYKAVMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=129094 ABO05_RS04960 WP_023079834.1 975942..977012(+) (xerS) [Streptococcus pyogenes strain M28PF1]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTGTCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCCTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48TG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806

Multiple sequence alignment