Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LA50_RS03760 Genome accession   NZ_CP009418
Coordinates   670704..672989 (+) Length   761 a.a.
NCBI ID   WP_002248535.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 665704..677989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS03740 (LA50_03930) pilM 667757..668872 (+) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  LA50_RS03745 (LA50_03935) pilN 668875..669474 (+) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  LA50_RS03750 (LA50_03940) - 669475..670122 (+) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  LA50_RS03755 (LA50_03945) pilP 670140..670685 (+) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  LA50_RS03760 (LA50_03950) pilQ 670704..672989 (+) 2286 WP_002248535.1 type IV pilus secretin PilQ Machinery gene
  LA50_RS03765 (LA50_03955) - 673951..674463 (+) 513 WP_002214526.1 shikimate kinase -
  LA50_RS03770 (LA50_03960) aroB 674543..675622 (+) 1080 WP_002221481.1 3-dehydroquinate synthase -
  LA50_RS03775 (LA50_03965) - 676912..677754 (+) 843 WP_002224653.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 81786.33 Da        Isoelectric Point: 10.1386

>NTDB_id=128991 LA50_RS03760 WP_002248535.1 670704..672989(+) (pilQ) [Neisseria meningitidis strain NM3686]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQATAPSTKSAV
SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQTAAPAKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFA
GQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKK
QNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQ
QGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATN
TLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGA
ETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTE
LKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPL
LGDIPVIGNLFKTRGKKTDRRELLIFITPRIMGTAGNSLRY

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=128991 LA50_RS03760 WP_002248535.1 670704..672989(+) (pilQ) [Neisseria meningitidis strain NM3686]
ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACAGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGA
CCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTC
GAATATGCCGATCCCCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCC
CCGCACGCCCCGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTACCGCACCGTCTACCAAGTCCGCAGTA
TCCGTATCCAAACCCTTTACCCCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTATCCGTATCCGCACC
GTTCAGCCCGGCAAAACAACAGGCGGCGGCATCAGCAAAACAACAGACGGCAGCACCAGCAAAACAACAGGCGGCAGCAC
CAGCAAAACAAACCAATATCGATTTCCGCAAAGACGGCAAAAATGCCGGCATTATCGAATTGGCTGCATTGGGCTTTGCC
GGGCAGCCCGACATCAGCCAACAGCACGACCACATCATCGTTACGCTGAAAAACCATACCCTGCCGACCACGCTCCAACG
CAGTTTGGATGTGGCAGACTTTAAAACACCGGTTCAAAAGGTTACGCTGAAACGCCTCAATAACGACACCCAGCTGATTA
TCACAACAGCCGGCAACTGGGAACTCGTCAACAAATCCGCCGCGCCCGGATACTTTACCTTCCAAGTCCTGCCGAAAAAA
CAAAACCTCGAGTCAGGCGGCGTGAACAATGCGCCCAAAACCTTCACAGGCCGGAAAATCTCCCTTGACTTCCAAGATGT
CGAAATCCGCACCATCCTGCAGATTTTGGCAAAAGAATCCGGGATGAACATTGTTGCCAGCGACTCCGTCAACGGCAAAA
TGACCCTCTCCCTCAAAGACGTACCTTGGGATCAGGCTTTGGATTTGGTTATGCAGGCACGCAACCTCGATATGCGCCAG
CAAGGGAACATCGTCAACATCGCGCCCCGCGACGAGCTGCTTGCCAAAGACAAAGCCTTCTTACAGGCGGAAAAAGACAT
TGCCGATCTGGGCGCGCTGTATTCACAAAACTTCCAATTGAAATACAAAAATGTGGAAGAATTCCGCAGCATCCTGCGTT
TGGACAATGCCGACACGACCGGAAACCGCAATACGCTTGTCAGCGGCAGGGGCAGCGTGCTGATCGATCCCGCCACCAAT
ACCCTGATTGTTACCGATACCCGCAGCGTCATCGAAAAATTCCGCAAACTGATTGACGAATTGGACGTACCCGCGCAACA
AGTGATGATTGAGGCGCGTATCGTCGAAGCGGCAGACGGCTTCTCGCGCGATTTGGGCGTTAAATTCGGCGCGACAGGCA
AGAAAAAGCTGAAAAATGATACAAGCGCATTCGGCTGGGGGGTAAACTCCGGCTTCGGCGGCGACGATAAATGGGGGGCC
GAAACCAAAATCAACCTGCCGATTACCGCTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCCTCCGGTGCCTTGAA
TTTGGAATTGTCCGCATCCGAATCGCTTTCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGACCCAAAACCGCAAAG
AGGCCAAAATCGAATCTGGTTACGAAATTCCTTTCACCGTAACCTCAATCGCGAACGGCGGCAGCAGCACGAACACGGAA
CTCAAAAAAGCCGTCTTGGGGCTGACCGTTACGCCGAACATCACGCCCGACGGCCAAATCATTATGACCGTCAAAATCAA
CAAGGACTCGCCTGCGCAATGTGCCTCCGGTAATCAGACGATTCTGTGTATTTCGACCAAAAACCTGAATACGCAGGCTA
TGGTTGAAAACGGCGGCACATTGATTGTCGGCGGTATTTATGAAGAAGACAACGGTAATACGCTGACCAAAGTCCCCCTG
TTGGGCGACATCCCCGTTATCGGCAACCTCTTTAAAACACGCGGGAAAAAAACCGACCGCCGCGAACTGCTGATTTTCAT
TACCCCGAGGATTATGGGTACGGCCGGCAACAGCCTGCGCTATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(593-752)

Bacterial type II/III secretion system short domain (Secretin_N)

(436-507)

Secretin and TonB N terminus short domain (STN)

(363-408)

AMIN domain (AMIN)

(43-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

99.474

100

0.995
  pilQ Neisseria meningitidis MC58

98.309

100

0.993
  pilQ Neisseria gonorrhoeae strain FA1090

90.933

100

0.909

Multiple sequence alignment