Detailed information NTG0128989

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ABA10_RS12935
• Genome accession: NZ_CP011534
• Coordinates: 2512423..2513550 (-)
• Length: 375 a.a.
• NCBI ID: WP_014477416.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain UD1022
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2507423..2518550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABA10_RS12910 (ABA10_12910)	-	2507617..2508135 (-)	519	WP_047182913.1	GNAT family N-acetyltransferase	-
ABA10_RS12915 (ABA10_12915)	-	2508154..2508609 (-)	456	WP_047182914.1	MarR family transcriptional regulator	-
ABA10_RS12920 (ABA10_12920)	-	2508725..2509372 (+)	648	WP_047182915.1	YitT family protein	-
ABA10_RS12925 (ABA10_12925)	-	2509478..2510278 (-)	801	WP_047182916.1	dihydrodipicolinate synthase family protein	-
ABA10_RS12930 (ABA10_12930)	-	2510427..2511806 (+)	1380	WP_047182917.1	PLP-dependent aminotransferase family protein	-
ABA10_RS12935 (ABA10_12935)	rapC	2512423..2513550 (-)	1128	WP_014477416.1	Rap family tetratricopeptide repeat protein	Regulator
ABA10_RS21860	-	2513736..2513885 (+)	150	WP_158336011.1	hypothetical protein	-
ABA10_RS12940 (ABA10_12940)	-	2514137..2514440 (+)	304	Protein_2498	tRNA-Val4	-
ABA10_RS12945 (ABA10_12945)	-	2514534..2514968 (+)	435	WP_047182918.1	SMI1/KNR4 family protein	-
ABA10_RS12950 (ABA10_12950)	-	2515214..2515936 (-)	723	WP_015384163.1	NPP1 family protein	-
ABA10_RS12955 (ABA10_12955)	bltR	2516522..2517343 (-)	822	WP_047182919.1	multidrug efflux transcriptional regulator BltR	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44164.33 Da
• Isoelectric Point: 5.6714

>NTDB_id=128989 ABA10_RS12935 WP_014477416.1 2512423..2513550(-) (rapC) [Bacillus subtilis strain UD1022]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=128989 ABA10_RS12935 WP_014477416.1 2512423..2513550(-) (rapC) [Bacillus subtilis strain UD1022]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (195-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.683	100	0.4