Detailed information NTG0128935

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: O165_RS03540
• Genome accession: NZ_CP009365
• Coordinates: 719839..722049 (+)
• Length: 736 a.a.
• NCBI ID: WP_038705671.1
• Uniprot ID: -
• Organism: Pseudomonas soli strain SJ10
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 714839..727049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O165_RS03510 (O165_003585)	-	715821..716060 (-)	240	WP_023631455.1	DUF3077 domain-containing protein	-
O165_RS03515 (O165_003590)	-	716057..716296 (-)	240	WP_023631456.1	hypothetical protein	-
O165_RS03520 (O165_003595)	-	716698..717321 (+)	624	WP_023631457.1	glutathione S-transferase	-
O165_RS03525 (O165_003600)	-	717455..718387 (+)	933	WP_023631458.1	ABC transporter ATP-binding protein	-
O165_RS03530 (O165_003605)	-	718384..719163 (+)	780	WP_023631459.1	ABC transporter permease	-
O165_RS03535	-	719047..719694 (-)	648	WP_123902457.1	DUF2062 domain-containing protein	-
O165_RS03540 (O165_003615)	comA	719839..722049 (+)	2211	WP_038705671.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
O165_RS03545 (O165_003620)	exbB	722173..722808 (+)	636	WP_031315993.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
O165_RS03550 (O165_003625)	-	722805..723239 (+)	435	WP_023632003.1	biopolymer transporter ExbD	-
O165_RS03555 (O165_003630)	lpxK	723239..724249 (+)	1011	WP_038705672.1	tetraacyldisaccharide 4'-kinase	-
O165_RS03560 (O165_003635)	-	724283..724468 (+)	186	WP_003247142.1	Trm112 family protein	-
O165_RS03565 (O165_003640)	kdsB	724465..725229 (+)	765	WP_038705673.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
O165_RS03570 (O165_003645)	-	725229..725693 (+)	465	WP_038705674.1	low molecular weight protein-tyrosine-phosphatase	-
O165_RS03575 (O165_003650)	murB	725690..726709 (+)	1020	WP_038705675.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79757.52 Da
• Isoelectric Point: 11.0334

>NTDB_id=128935 O165_RS03540 WP_038705671.1 719839..722049(+) (comA) [Pseudomonas soli strain SJ10]
MRTGMLALVLGLLSLRFLPVLPPVGWLIPLLLLALACLRTRIWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
RVVGLPTRTERGVRFELEHAESRRAQLPRRLQLSWFAGPELRAGERWRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKAGEQVGQAAVHWRDAVRQRLMNVDAHGREAALTALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLGMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLVLCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISFAVLPLAL
LGTAALPVAGVGEGLLWLAGLSLEGLFRLLAQLAGQLPAWLPEPLPLWAWLLVALGALLVLLPRGVPLRLPGAVMLLALW
APREEVPHGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAHGDSDLGESVVLPTLRRLGVRHLDLMLVSHGHADHVGGAA
AVRRGLPVTRVLAGEVAGLAPAALCESGERWRWDGVDFELWHWPQGTSSNDRSCVLRVVANGERLLLAGDMEAAAERAWL
AASEDPRIDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRNNGFGHPHAQVIERYRRHGVQVHDTALAGALELRLGRQG
AVVEGRAQRRFWREGE

Nucleotide

• Length: 2211 bp

>NTDB_id=128935 O165_RS03540 WP_038705671.1 719839..722049(+) (comA) [Pseudomonas soli strain SJ10]
ATGCGCACAGGGATGCTGGCGCTGGTGCTCGGGCTGTTGAGCCTGCGCTTTTTGCCCGTTTTGCCGCCGGTCGGGTGGCT
GATTCCGTTGCTGTTGCTGGCCTTGGCCTGTCTGCGCACGCGGATCTGGCCGCTGGGCTGGTTCGTGCTGGGTGGCTGTT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGCCTGGCCCCGGCGCTGGATGGCCGCACACTGTGGTTGGAGGGG
CGGGTGGTGGGGCTGCCGACCCGCACGGAGCGCGGCGTGCGTTTCGAGCTGGAGCATGCTGAGTCGCGCCGGGCGCAATT
GCCCAGGCGCCTGCAACTTAGCTGGTTTGCCGGGCCTGAATTGCGCGCCGGTGAGCGTTGGCGCCTGGCGGTGAACCTGC
GCCAGCCCCATGGGCTGCTCAACCCCCATGGCCCGGACCGCGAAGCATTGTTGTTGGCCCGGGGTATCGGCGCCACTGGC
TCGGTCAAGGCCGGCGAGCAGGTCGGGCAGGCTGCGGTGCATTGGCGCGATGCCGTGCGCCAGCGGTTGATGAACGTGGA
TGCCCATGGGCGCGAGGCGGCGCTGACGGCCCTGGTGCTGGGCGACGGCGCCGGGCTGGCACGCGAGGATTGGCAGACCC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTACGGCCTG
GTCGCGGGCCTGGCGCGGCTGGGCGCCTGGCCATCGCGCTGGCCGTGGCTGCCCTGGGCTTGTGGCCTGGGCATGGCCGC
GGCATTGGGCTACGGCTGGCTGGCCGGCTTCGGCGTGCCGGTGCAACGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCAGGCACCTGGGGGCAGCCTTGCCGCTGCTGTTGGCGTTGTCGGGGGTGTTGCTGATCAATCCATTG
GCCAGTCTGCTGCCGGGTTTCTGGCTGTCATTTGCCGCGGTTGGCGTGCTGGTGCTGTGCTTCTCTGCCCGGCTCGGCGC
CTGGCGGCCTTGGCAGGCCTGGAGCCGCGCCCAGTGGGTAATCGCCGTGGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCGCTGGCCTTG
CTTGGTACGGCGGCGTTGCCGGTGGCTGGGGTGGGGGAGGGGCTGCTGTGGCTGGCGGGGCTTTCGCTGGAGGGGCTGTT
TCGCCTGCTGGCGCAGCTTGCGGGGCAGTTGCCTGCATGGCTGCCCGAACCGTTGCCGCTGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGTTGGTGCTGCTGCCTCGGGGCGTGCCGTTGCGTTTGCCGGGCGCGGTGATGCTGCTGGCCTTGTGG
GCGCCGCGCGAGGAGGTGCCCCATGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTGCTGCTGCG
TACCCGTCATCACGCGCTGTTGTACGACGCCGGGCCTGCGCATGGGGACAGCGACCTGGGCGAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGTTGGGGGTCAGGCACCTCGACCTGATGCTGGTCAGCCACGGTCACGCCGATCATGTCGGCGGGGCGGCG
GCGGTGCGTCGGGGGCTGCCGGTGACGCGGGTGCTGGCCGGGGAGGTTGCCGGGCTCGCGCCTGCCGCGCTGTGCGAGAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAAGGCACGTCCAGCAACGACCGTTCCT
GCGTGCTGCGGGTGGTGGCCAATGGCGAGCGCCTGCTGCTGGCCGGCGACATGGAGGCCGCGGCGGAGCGGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGTATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCGCTGGCGCCGCGCGGGGTGATGATTTCGCGGGGGAGGAACAACGGTTTCGGGCATCCGCATGCGCAGGTGATCG
AGCGCTATCGGCGCCATGGGGTGCAGGTGCATGATACGGCGCTGGCGGGCGCGCTGGAGTTGCGCCTGGGGCGCCAGGGT
GCGGTGGTGGAGGGGCGTGCGCAGCGCAGGTTCTGGCGCGAAGGCGAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-676)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.611	97.826	0.573
comA	Ralstonia pseudosolanacearum GMI1000	35.714	100	0.408