Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABA10_RS06245 Genome accession   NZ_CP011534
Coordinates   1210453..1211370 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain UD1022     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205453..1216370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS06230 (ABA10_06230) trpS 1206033..1207025 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  ABA10_RS06235 (ABA10_06235) oppA 1207769..1209406 (+) 1638 WP_047182430.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ABA10_RS06240 (ABA10_06240) oppB 1209514..1210449 (+) 936 WP_047182431.1 oligopeptide ABC transporter permease OppB -
  ABA10_RS06245 (ABA10_06245) amiD 1210453..1211370 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ABA10_RS06250 (ABA10_06250) oppD 1211375..1212451 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ABA10_RS06255 (ABA10_06255) oppF 1212453..1213370 (+) 918 WP_047182432.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ABA10_RS06260 (ABA10_06260) yjbB 1213474..1214691 (+) 1218 WP_080344185.1 MFS transporter -
  ABA10_RS06265 (ABA10_06265) yjbC 1214855..1215433 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ABA10_RS06270 (ABA10_06270) spx 1215614..1216009 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=128935 ABA10_RS06245 WP_003232954.1 1210453..1211370(+) (amiD) [Bacillus subtilis strain UD1022]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=128935 ABA10_RS06245 WP_003232954.1 1210453..1211370(+) (amiD) [Bacillus subtilis strain UD1022]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATTGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGTGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment