Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   O165_RS03545 Genome accession   NZ_CP009365
Coordinates   722173..722808 (+) Length   211 a.a.
NCBI ID   WP_031315993.1    Uniprot ID   A0AAJ5SRG4
Organism   Pseudomonas soli strain SJ10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717173..727808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O165_RS03525 (O165_003600) - 717455..718387 (+) 933 WP_023631458.1 ABC transporter ATP-binding protein -
  O165_RS03530 (O165_003605) - 718384..719163 (+) 780 WP_023631459.1 ABC transporter permease -
  O165_RS03535 - 719047..719694 (-) 648 WP_123902457.1 DUF2062 domain-containing protein -
  O165_RS03540 (O165_003615) comA 719839..722049 (+) 2211 WP_038705671.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  O165_RS03545 (O165_003620) exbB 722173..722808 (+) 636 WP_031315993.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  O165_RS03550 (O165_003625) - 722805..723239 (+) 435 WP_023632003.1 biopolymer transporter ExbD -
  O165_RS03555 (O165_003630) lpxK 723239..724249 (+) 1011 WP_038705672.1 tetraacyldisaccharide 4'-kinase -
  O165_RS03560 (O165_003635) - 724283..724468 (+) 186 WP_003247142.1 Trm112 family protein -
  O165_RS03565 (O165_003640) kdsB 724465..725229 (+) 765 WP_038705673.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O165_RS03570 (O165_003645) - 725229..725693 (+) 465 WP_038705674.1 low molecular weight protein-tyrosine-phosphatase -
  O165_RS03575 (O165_003650) murB 725690..726709 (+) 1020 WP_038705675.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22829.14 Da        Isoelectric Point: 7.3616

>NTDB_id=128936 O165_RS03545 WP_031315993.1 722173..722808(+) (exbB) [Pseudomonas soli strain SJ10]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=128936 O165_RS03545 WP_031315993.1 722173..722808(+) (exbB) [Pseudomonas soli strain SJ10]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGTTGCCATGGCGATCGTCGT
CGAGCGTCTATGGACCTTGCGCGCCAGCCGTGTCAGCCCACCGCACTTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCAGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CGGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGCTGGCCGGCGGTATTTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment