Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IX91_RS09290 Genome accession   NZ_CP009354
Coordinates   2051096..2051683 (-) Length   195 a.a.
NCBI ID   WP_004749039.1    Uniprot ID   F9TE39
Organism   Vibrio tubiashii ATCC 19109     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046096..2056683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX91_RS09270 (IX91_09465) - 2046369..2047634 (-) 1266 WP_004749035.1 DUF945 family protein -
  IX91_RS09275 (IX91_09470) - 2047808..2049757 (+) 1950 WP_004749036.1 ATP-binding protein -
  IX91_RS09280 (IX91_09475) - 2049758..2050255 (+) 498 WP_004749037.1 response regulator -
  IX91_RS09285 (IX91_09480) - 2050422..2050988 (+) 567 WP_004749038.1 hypothetical protein -
  IX91_RS09290 (IX91_09485) tfoX 2051096..2051683 (-) 588 WP_004749039.1 TfoX/Sxy family DNA transformation protein Regulator
  IX91_RS09295 (IX91_09490) - 2052039..2052959 (+) 921 WP_004749040.1 HDOD domain-containing protein -
  IX91_RS09300 (IX91_09495) - 2052998..2053903 (+) 906 WP_004749041.1 lysine exporter LysO family protein -
  IX91_RS09305 (IX91_09500) - 2054020..2054532 (+) 513 WP_004749042.1 hypothetical protein -
  IX91_RS09310 (IX91_09505) panP 2054675..2056321 (+) 1647 WP_004749304.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22488.73 Da        Isoelectric Point: 8.9714

>NTDB_id=128860 IX91_RS09290 WP_004749039.1 2051096..2051683(-) (tfoX) [Vibrio tubiashii ATCC 19109]
MDMTEQQFIQYVQKFGDFQKRSMFGGTGLFRDEAMFALLSADKIFIRGGEALDETLNQLGCEKYRHVKKQTTATVNYYDI
TQLFSSQHQRLSELVEQSINFSVSQREFKRSSANRRLRDLPNMQLTLERMVKKAGVEDVDTFLELGAPAVFSRVKQAYGS
DVDVKLLWKFAGAIEGIHWKLIQEPHKRQLLASCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=128860 IX91_RS09290 WP_004749039.1 2051096..2051683(-) (tfoX) [Vibrio tubiashii ATCC 19109]
ATGGATATGACAGAGCAACAATTTATTCAATACGTACAAAAGTTTGGCGACTTTCAAAAACGATCTATGTTTGGTGGTAC
TGGGTTGTTTAGAGACGAAGCTATGTTCGCACTACTAAGTGCAGACAAAATATTCATCAGAGGTGGAGAAGCATTAGATG
AAACGCTTAACCAGCTAGGTTGTGAGAAATACCGCCATGTTAAAAAACAGACCACAGCGACGGTAAATTATTACGACATA
ACCCAGCTTTTTTCGAGCCAACATCAGCGACTGAGTGAGCTAGTAGAACAATCTATAAATTTTTCCGTATCGCAGCGTGA
GTTCAAGCGTTCATCGGCGAACAGACGCCTGCGTGATCTGCCTAATATGCAACTGACCTTAGAACGTATGGTGAAAAAGG
CAGGGGTAGAGGATGTAGATACCTTTTTAGAACTTGGCGCACCTGCAGTCTTCTCAAGAGTGAAGCAAGCCTATGGCAGT
GATGTAGATGTAAAGCTGCTGTGGAAATTCGCTGGTGCAATCGAAGGTATTCATTGGAAGCTCATTCAAGAGCCACATAA
ACGCCAACTATTGGCGAGTTGTCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9TE39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.958

98.462

0.728
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.958

98.462

0.728
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.958

98.462

0.728
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.958

98.462

0.728
  tfoX Vibrio cholerae strain A1552

73.958

98.462

0.728
  tfoX Vibrio campbellii strain DS40M4

69.231

100

0.692
  tfoX Vibrio parahaemolyticus RIMD 2210633

66.154

100

0.662
  tfoX Aliivibrio fischeri ES114

57.592

97.949

0.564

Multiple sequence alignment