Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ABE83_RS30445 | Genome accession | NZ_CP011522 |
| Coordinates | 7237353..7238438 (+) | Length | 361 a.a. |
| NCBI ID | WP_053561976.1 | Uniprot ID | A0AAD0VDB3 |
| Organism | Streptomyces sp. CFMR 7 strain CFMR-7 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 7232353..7243438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABE83_RS30415 (ABE83_30475) | - | 7232710..7233258 (+) | 549 | WP_053561975.1 | hypothetical protein | - |
| ABE83_RS30420 (ABE83_30480) | pdxS | 7233380..7234300 (+) | 921 | WP_019765392.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| ABE83_RS30425 (ABE83_30485) | pdxT | 7234307..7234900 (+) | 594 | WP_019765391.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| ABE83_RS30430 (ABE83_30490) | - | 7234962..7235714 (+) | 753 | WP_029395566.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ABE83_RS35725 (ABE83_30495) | ruvC | 7235869..7236447 (+) | 579 | Protein_6128 | crossover junction endodeoxyribonuclease RuvC | - |
| ABE83_RS30440 (ABE83_30500) | ruvA | 7236696..7237322 (+) | 627 | WP_028420079.1 | Holliday junction branch migration protein RuvA | - |
| ABE83_RS30445 (ABE83_30505) | ruvB | 7237353..7238438 (+) | 1086 | WP_053561976.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ABE83_RS30450 (ABE83_30510) | yajC | 7238605..7239093 (+) | 489 | WP_053561977.1 | preprotein translocase subunit YajC | - |
| ABE83_RS30455 (ABE83_30515) | secD | 7239247..7241004 (+) | 1758 | WP_053561978.1 | protein translocase subunit SecD | - |
| ABE83_RS30460 (ABE83_30520) | secF | 7241006..7242103 (+) | 1098 | WP_053561979.1 | protein translocase subunit SecF | - |
| ABE83_RS30465 (ABE83_30525) | - | 7242103..7242654 (+) | 552 | WP_019765385.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 361 a.a. Molecular weight: 38528.97 Da Isoelectric Point: 4.7850
>NTDB_id=128708 ABE83_RS30445 WP_053561976.1 7237353..7238438(+) (ruvB) [Streptomyces sp. CFMR 7 strain CFMR-7]
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSARLLDVGIDADGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGAIDREIAAAALKVYEVDGRGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPSHGVKGQQGLFGA
MNWDETGPETDEPTGPVFDDRLVDADADGEDTAVEAALRPKDLEEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVVHRSARLLDVGIDADGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGAIDREIAAAALKVYEVDGRGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPSHGVKGQQGLFGA
Nucleotide
Download Length: 1086 bp
>NTDB_id=128708 ABE83_RS30445 WP_053561976.1 7237353..7238438(+) (ruvB) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCGACCGGCCCGGTCTTCGACGACCGGCTGGTCGACGCGGACGC
GGACGGCGAGGACACCGCGGTCGAGGCGGCCCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCCATGATCATCGCGGCGGAGATGAACGCCCCGATCCGGATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGGGAGGTCCTCTTCCTGGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCCATCCCCCTCGAACTGCCCCCGTTCACCCTGGTCGGGGCCACCACCCGGGCCGGGCTGCTCCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCGTCCACCGCTCCGCCCGCC
TCCTGGACGTCGGCATCGACGCGGACGGCGCCGCCGAGATCGCCGGACGCTCCCGGGGCACCCCCCGTATCGCCAACCGC
CTGCTGCGCCGGGTCCGGGACTACGCCCAGGTCAAGGCCGAGGGCGCGATCGACCGGGAGATCGCCGCCGCGGCCCTCAA
GGTGTACGAGGTTGACGGCCGCGGACTCGATCGGCTGGACCGTGCGGTGCTCGGCGCGCTGCTGAAACTCTTCGGCGGCG
GGCCGGTCGGCCTCTCCACCCTCGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGGCTGCTGGCCAGGACGCCGCGCGGGCGGGTGGCCACCCCGGCCGCCTGGGCCCACCTGGGACTGGTTCC
GCCGTCCCACGGCGTAAAGGGACAACAGGGTCTGTTCGGGGCGTGA
ATGAACTGGGACGAGACCGGACCCGAGACCGACGAGCCGACCGGCCCGGTCTTCGACGACCGGCTGGTCGACGCGGACGC
GGACGGCGAGGACACCGCGGTCGAGGCGGCCCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGC
CTCGGCAAGACCACCCTCTCCATGATCATCGCGGCGGAGATGAACGCCCCGATCCGGATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGGGAGGTCCTCTTCCTGGACGAGATCCACCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCC
ACCGCCATCCCCCTCGAACTGCCCCCGTTCACCCTGGTCGGGGCCACCACCCGGGCCGGGCTGCTCCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGCGTCGTCCACCGCTCCGCCCGCC
TCCTGGACGTCGGCATCGACGCGGACGGCGCCGCCGAGATCGCCGGACGCTCCCGGGGCACCCCCCGTATCGCCAACCGC
CTGCTGCGCCGGGTCCGGGACTACGCCCAGGTCAAGGCCGAGGGCGCGATCGACCGGGAGATCGCCGCCGCGGCCCTCAA
GGTGTACGAGGTTGACGGCCGCGGACTCGATCGGCTGGACCGTGCGGTGCTCGGCGCGCTGCTGAAACTCTTCGGCGGCG
GGCCGGTCGGCCTCTCCACCCTCGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGGCTGCTGGCCAGGACGCCGCGCGGGCGGGTGGCCACCCCGGCCGCCTGGGCCCACCTGGGACTGGTTCC
GCCGTCCCACGGCGTAAAGGGACAACAGGGTCTGTTCGGGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
52.853 |
92.244 |
0.488 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52.778 |
89.751 |
0.474 |
| ruvB | Streptococcus pneumoniae R6 |
52.778 |
89.751 |
0.474 |
| ruvB | Streptococcus pneumoniae D39 |
52.778 |
89.751 |
0.474 |
| ruvB | Synechocystis sp. PCC 6803 |
53.016 |
87.258 |
0.463 |
| ruvB | Helicobacter pylori 26695 |
50.314 |
88.089 |
0.443 |