Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABE83_RS09200 Genome accession   NZ_CP011522
Coordinates   2354510..2356132 (-) Length   540 a.a.
NCBI ID   WP_053559191.1    Uniprot ID   -
Organism   Streptomyces sp. CFMR 7 strain CFMR-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2349510..2361132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE83_RS09180 (ABE83_09205) - 2350650..2351213 (+) 564 WP_053562745.1 M23 family metallopeptidase -
  ABE83_RS09185 (ABE83_09210) - 2351389..2351946 (-) 558 WP_018488723.1 TetR/AcrR family transcriptional regulator -
  ABE83_RS09190 (ABE83_09215) whiG 2352043..2352879 (-) 837 WP_053559189.1 RNA polymerase sigma factor WhiG -
  ABE83_RS09195 (ABE83_09220) dprA 2353134..2354285 (-) 1152 WP_078949627.1 DNA-processing protein DprA -
  ABE83_RS09200 (ABE83_09225) comM 2354510..2356132 (-) 1623 WP_053559191.1 ATP-binding protein Machinery gene
  ABE83_RS09205 (ABE83_09230) - 2356132..2356491 (-) 360 WP_053559192.1 YraN family protein -
  ABE83_RS09210 (ABE83_09235) - 2356725..2357033 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  ABE83_RS09215 (ABE83_09240) - 2357098..2357586 (-) 489 WP_019763528.1 NUDIX hydrolase -
  ABE83_RS09220 (ABE83_09245) lepB 2357583..2358335 (-) 753 WP_053559193.1 signal peptidase I -
  ABE83_RS09225 (ABE83_09250) lepB 2358386..2359300 (-) 915 WP_019763530.1 signal peptidase I -
  ABE83_RS09230 (ABE83_09255) lepB 2359203..2360345 (-) 1143 WP_053559194.1 signal peptidase I -
  ABE83_RS09235 (ABE83_09260) lepB 2360338..2361111 (-) 774 WP_053559195.1 signal peptidase I -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55771.27 Da        Isoelectric Point: 6.8697

>NTDB_id=128664 ABE83_RS09200 WP_053559191.1 2354510..2356132(-) (comM) [Streptomyces sp. CFMR 7 strain CFMR-7]
MGYARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLIESRDRVRAAVTNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERLDPAAIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYQQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPDEPADDRGRPDAMLAGLMVPGTGLGAGLAPASVRGEGHTPDLADVAGQPRPRKALEVAAAGGHHLL
FSGPPGAGKTMLAERLPAVLPPLTRQESLEVTAVHSVAGILPPGEPLVSRAPYCAPHHSATMQSLVGGGNGMPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARAAGVVRLPARFLMLLAANPCPCGRHTLTGAGCECPPSVVRRYQAR
LSGPLLDRVDLRVEVEPVDRADLLEQGGRGEPTAVVAARVREARARAAERLAGTPWTTNSEVPGHELRTRLLAVPGALAA
AERDLERGLLTARGLDRVLRVAWTVADLRGAPRPEARDVAVALELRTGIHRGAPMEAGAL

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=128664 ABE83_RS09200 WP_053559191.1 2354510..2356132(-) (comM) [Streptomyces sp. CFMR 7 strain CFMR-7]
ATGGGGTACGCACGCGCGTGTTCCGTGGCGCTGGTGGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCGGACCTGGAGCC
CGGGGTGGCGGCCTTCACGCTGGTCGGGCTGCCGGACAAGAGCCTGATCGAGAGCCGCGACCGGGTGCGGGCCGCGGTGA
CGAATTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCTCCCCGGCCTCGGTCCCCAAGAGCGGTTCGGGC
TTCGATCTCGCCGTGGCGTGCGCGGTCCTCGGCGCGGCGGAGCGGCTCGACCCCGCCGCCATCGCGGACGTGGTGATGAT
CGGGGAGCTGGGGCTCGACGGCCGGGTCCGTCCCGTACGGGGGGTGCTGCCCGCGGTCCTCGCGGCGGCCGAGGCCGGAT
ATCAGCAGGTCGTCGTCCCCGAGCAGACGGCCGGGGAGGCCGCCCTGGTGCCGGGCGTCTCGGTCCTCGGCGTACGGAGC
CTGCGCCAGCTCATCGCCGTCCTCTGCGACGAACCGGTCCCCGACGAGCCCGCCGACGACCGGGGGCGTCCCGACGCCAT
GCTCGCCGGCCTCATGGTCCCGGGCACCGGCCTCGGCGCGGGTCTCGCCCCCGCCTCGGTGCGCGGCGAGGGGCACACCC
CGGACCTGGCGGACGTGGCGGGCCAGCCGCGCCCCCGCAAGGCCCTGGAGGTGGCGGCGGCCGGGGGACACCATCTGCTC
TTCTCCGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCCGAGCGGCTCCCGGCGGTCCTGCCGCCGCTCACCCGGCAGGA
GTCCCTCGAAGTGACGGCGGTCCACTCCGTGGCGGGCATCCTTCCCCCGGGTGAACCGTTGGTCTCCCGGGCGCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGTCCCTGGTGGGCGGCGGCAACGGGATGCCGAGACCAGGGGCGGTCTCCCTC
GCCCACCGAGGGGTCCTCTTCCTGGATGAGGCGCCCGAATTTTCCGGAAAAGCCCTGGATGCGCTGCGCCAGCCGCTGGA
GTCGGGCCATGTGGTGGTGGCGCGGGCGGCGGGGGTGGTGCGGCTGCCGGCCAGATTCCTGATGCTCCTGGCCGCCAACC
CGTGCCCCTGCGGCCGGCACACCCTGACGGGCGCGGGCTGCGAGTGCCCGCCCTCGGTGGTCCGCCGCTACCAGGCCCGC
CTCTCCGGGCCTTTGCTCGACCGGGTGGACCTGCGGGTCGAGGTGGAGCCGGTCGACCGCGCGGACCTGCTGGAGCAGGG
CGGCCGGGGCGAGCCGACGGCCGTGGTGGCGGCACGGGTGCGGGAGGCCAGGGCCCGGGCGGCGGAGCGGCTGGCGGGGA
CGCCCTGGACCACCAACAGCGAGGTCCCCGGCCACGAACTGCGCACCCGCCTGCTGGCCGTCCCCGGAGCCCTGGCCGCC
GCCGAACGCGACCTGGAACGCGGCCTCCTCACGGCCCGGGGCCTGGACCGGGTCCTGCGGGTCGCCTGGACGGTCGCCGA
CCTCCGGGGCGCGCCCAGGCCGGAGGCCCGGGACGTGGCGGTGGCCCTGGAGCTGCGGACGGGCATCCACCGCGGGGCAC
CGATGGAGGCGGGAGCGCTGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.114

97.407

0.391
  comM Acinetobacter baylyi ADP1

39.434

98.148

0.387
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.588

94.444

0.383
  comM Vibrio cholerae strain A1552

40.588

94.444

0.383
  comM Haemophilus influenzae Rd KW20

39.216

94.444

0.37
  comM Glaesserella parasuis strain SC1401

37.03

98.519

0.365

Multiple sequence alignment