Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AA958_RS03290 Genome accession   NZ_CP011492
Coordinates   844717..845760 (-) Length   347 a.a.
NCBI ID   WP_047014725.1    Uniprot ID   -
Organism   Streptomyces sp. CNQ-509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839717..850760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA958_RS03270 (AA958_03270) - 840295..840843 (-) 549 WP_047014721.1 adenine phosphoribosyltransferase -
  AA958_RS03275 (AA958_03275) secF 840840..842042 (-) 1203 WP_047014722.1 protein translocase subunit SecF -
  AA958_RS03280 (AA958_03280) secD 842044..843825 (-) 1782 WP_047014723.1 protein translocase subunit SecD -
  AA958_RS03285 (AA958_03285) yajC 843989..844483 (-) 495 WP_173534818.1 preprotein translocase subunit YajC -
  AA958_RS03290 (AA958_03290) ruvB 844717..845760 (-) 1044 WP_047014725.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AA958_RS03295 (AA958_03295) ruvA 845828..846451 (-) 624 WP_047014726.1 Holliday junction branch migration protein RuvA -
  AA958_RS03300 (AA958_03300) ruvC 846448..847107 (-) 660 WP_078898138.1 crossover junction endodeoxyribonuclease RuvC -
  AA958_RS03305 (AA958_03305) - 847231..847983 (-) 753 WP_047014727.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AA958_RS03310 (AA958_03310) pdxT 848055..848648 (-) 594 WP_047014728.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  AA958_RS03315 (AA958_03315) pdxS 848660..849580 (-) 921 WP_047014729.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  AA958_RS03320 (AA958_03320) - 849764..850318 (-) 555 WP_047014730.1 membrane protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37104.49 Da        Isoelectric Point: 5.1632

>NTDB_id=128495 AA958_RS03290 WP_047014725.1 844717..845760(-) (ruvB) [Streptomyces sp. CNQ-509]
MTWEDADPRLVDSAADADDRAVETALRPKDLAEFVGQERVREQLDLVLRAARQRGGAADHVLLSGAPGLGKTTLAMIVAA
EMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDELHRMSRPAEEMLYMAMEDLRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYSPAELERVLHRSAHLLDVAVDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVK
ADGVITREIAARGLEVYEVDDRGLDRLDRAVLGALLKLFSGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLAPPQPGGGVQQTAF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=128495 AA958_RS03290 WP_047014725.1 844717..845760(-) (ruvB) [Streptomyces sp. CNQ-509]
ATGACCTGGGAGGACGCCGACCCGCGGCTGGTGGACTCGGCCGCCGACGCCGACGACCGGGCGGTGGAGACCGCACTGCG
CCCCAAGGACCTGGCCGAGTTCGTCGGCCAGGAGCGGGTCCGCGAGCAGCTCGACCTGGTGCTGCGCGCCGCCCGCCAGC
GCGGCGGCGCCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTCGCGATGATCGTCGCCGCA
GAGATGGCCGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGCGATCCTCTCCTCCCT
CCAGGAGGGCGAGGTGCTCTTCCTCGACGAGCTGCACCGCATGTCCCGCCCCGCCGAGGAGATGCTCTACATGGCAATGG
AGGACCTGCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCGCTGGAGCTGCCCCCCTTCACCCTG
GTCGGCGCCACCACCCGGGCCGGGCTGCTGCCCCCGCCGCTGCGCGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTA
CTCGCCGGCCGAGCTGGAGCGCGTCCTGCACCGCTCCGCCCACCTCCTCGACGTCGCCGTGGACGCCGCAGGCGCCGCCG
AGATCGCCGGCCGCTCCCGCGGCACGCCCCGCATCGCGAACCGCCTGCTGCGCCGGGTGCGGGACTACGCCCAGGTCAAG
GCCGACGGCGTGATCACGCGCGAGATCGCCGCCCGCGGCCTGGAGGTCTACGAGGTCGACGACCGCGGCCTCGACCGCCT
CGACCGGGCGGTCCTCGGCGCCCTGCTCAAGCTCTTCTCCGGCGGCCCCGTCGGGCTGTCCACGCTGGCCGTGGCGGTGG
GGGAGGAGCGGGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTCGTACGCGAAGGGCTGCTGGCCCGTACGCCCCGCGGC
CGCGTCGCCACTCCGGCGGCCTGGGCCCACCTGGGCCTTGCGCCCCCGCAGCCCGGCGGCGGCGTGCAGCAGACCGCGTT
CTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(187-260)

RuvB C-terminal winged helix domain (WHD_RuvB)

(262-331)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.172

95.389

0.507
  ruvB Streptococcus pneumoniae TIGR4

51.235

93.372

0.478
  ruvB Streptococcus pneumoniae R6

51.235

93.372

0.478
  ruvB Streptococcus pneumoniae D39

51.235

93.372

0.478
  ruvB Synechocystis sp. PCC 6803

52.215

91.066

0.476
  ruvB Helicobacter pylori 26695

47.385

93.66

0.444

Multiple sequence alignment