Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AA974_RS07795 | Genome accession | NZ_CP011487 |
| Coordinates | 350501..351511 (-) | Length | 336 a.a. |
| NCBI ID | WP_064433157.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PNG84A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 345501..356511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA974_RS01670 (AA974_01690) | - | 345620..345994 (-) | 375 | WP_000772148.1 | chemotaxis response regulator CheY | - |
| AA974_RS01675 (AA974_01695) | - | 346357..346887 (+) | 531 | WP_230380972.1 | outer membrane protein | - |
| AA974_RS01685 (AA974_01705) | - | 347019..347426 (-) | 408 | WP_064433151.1 | hypothetical protein | - |
| AA974_RS01690 (AA974_01710) | - | 347429..347659 (-) | 231 | WP_064433152.1 | PP0621 family protein | - |
| AA974_RS01695 (AA974_01715) | rsmG | 347653..348189 (-) | 537 | WP_064433153.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| AA974_RS01700 (AA974_01720) | queA | 348186..349223 (-) | 1038 | WP_064433154.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| AA974_RS01705 (AA974_01725) | tatC | 349224..349973 (-) | 750 | WP_064433155.1 | twin-arginine translocase subunit TatC | - |
| AA974_RS01710 (AA974_01730) | tatB | 349966..350433 (-) | 468 | WP_064433156.1 | Sec-independent protein translocase protein TatB | - |
| AA974_RS07795 (AA974_01735) | ruvB | 350501..351511 (-) | 1011 | WP_064433157.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AA974_RS07800 (AA974_01740) | panB | 351512..352324 (-) | 813 | WP_064433158.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| AA974_RS01725 (AA974_01745) | - | 352472..353194 (+) | 723 | WP_064434044.1 | hypothetical protein | - |
| AA974_RS01730 (AA974_01750) | - | 353184..354029 (+) | 846 | WP_064433159.1 | outer membrane beta-barrel protein | - |
| AA974_RS01735 (AA974_01755) | - | 354038..354985 (+) | 948 | WP_064433160.1 | outer membrane beta-barrel protein | - |
| AA974_RS01740 (AA974_01760) | - | 354995..356317 (+) | 1323 | WP_064433161.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37415.41 Da Isoelectric Point: 6.3673
>NTDB_id=128488 AA974_RS07795 WP_064433157.1 350501..351511(-) (ruvB) [Helicobacter pylori strain PNG84A]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEYVIEPFLLANGYLERTAKGRIATPK
THTLLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEYVIEPFLLANGYLERTAKGRIATPK
THTLLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=128488 AA974_RS07795 WP_064433157.1 350501..351511(-) (ruvB) [Helicobacter pylori strain PNG84A]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCTGGTTTAGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCTATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTGTTATACCCAGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGATCAGGTCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCACTAAACTCAACCAAGATATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTCTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAGGATGAAGGCACGA
TTGAATATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACACGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCTGGTTTAGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCTATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTGTTATACCCAGCTATGGAAGATTTCAGACTGG
ATATTATCATAGGATCAGGTCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCACTAAACTCAACCAAGATATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTCTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAGGATGAAGGCACGA
TTGAATATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACACGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |