Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | AA974_RS02145 | Genome accession | NZ_CP011487 |
| Coordinates | 443306..443857 (+) | Length | 183 a.a. |
| NCBI ID | WP_064433224.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PNG84A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 438306..448857
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA974_RS02130 (AA974_02150) | cysS | 438485..439882 (-) | 1398 | WP_064433221.1 | cysteine--tRNA ligase | - |
| AA974_RS02135 (AA974_02155) | murJ | 439883..441343 (-) | 1461 | WP_064433222.1 | murein biosynthesis integral membrane protein MurJ | - |
| AA974_RS02140 (AA974_02160) | - | 441436..443280 (+) | 1845 | WP_064433223.1 | FapA family protein | - |
| AA974_RS02145 (AA974_02165) | ruvA | 443306..443857 (+) | 552 | WP_064433224.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| AA974_RS02150 (AA974_02170) | - | 444088..444363 (+) | 276 | WP_230380955.1 | hypothetical protein | - |
| AA974_RS02160 (AA974_02175) | - | 444889..445620 (-) | 732 | WP_064433227.1 | NYN domain-containing protein | - |
| AA974_RS02165 (AA974_02180) | ruvC | 445751..446224 (+) | 474 | WP_064433228.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AA974_RS02170 (AA974_02185) | - | 446225..448600 (-) | 2376 | WP_064433229.1 | TonB-dependent receptor | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20181.80 Da Isoelectric Point: 9.4305
>NTDB_id=128466 AA974_RS02145 WP_064433224.1 443306..443857(+) (ruvA) [Helicobacter pylori strain PNG84A]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSVEINKV
LKTLKPNLSTEAAIKEALQQLRS
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSVEINKV
LKTLKPNLSTEAAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=128466 AA974_RS02145 WP_064433224.1 443306..443857(+) (ruvA) [Helicobacter pylori strain PNG84A]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAGGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATTCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTGGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCTTAGAGAGTTTGGGCTTTAAAAGCGTTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAGGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATTCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTGGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACCAGCCCTGCACGCAATGAAGTCTTTTTAGCCTTAGAGAGTTTGGGCTTTAAAAGCGTTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
95.082 |
100 |
0.951 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |