Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AA977_RS01890 Genome accession   NZ_CP011486
Coordinates   397088..398098 (-) Length   336 a.a.
NCBI ID   WP_064434367.1    Uniprot ID   -
Organism   Helicobacter pylori strain K26A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 392088..403098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA977_RS01845 (AA977_01875) - 392182..392556 (-) 375 WP_000772146.1 chemotaxis response regulator CheY -
  AA977_RS01850 (AA977_01880) - 392841..393443 (+) 603 WP_033602146.1 outer membrane protein -
  AA977_RS01860 (AA977_01890) - 393576..393983 (-) 408 WP_064434361.1 hypothetical protein -
  AA977_RS01865 (AA977_01895) - 393986..394228 (-) 243 WP_064434362.1 PP0621 family protein -
  AA977_RS01870 (AA977_01900) rsmG 394222..394758 (-) 537 WP_064434363.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AA977_RS01875 (AA977_01905) queA 394755..395792 (-) 1038 WP_064434364.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  AA977_RS01880 (AA977_01910) tatC 395793..396530 (-) 738 WP_064434365.1 twin-arginine translocase subunit TatC -
  AA977_RS01885 (AA977_01915) tatB 396523..397020 (-) 498 WP_064434366.1 Sec-independent protein translocase protein TatB -
  AA977_RS01890 (AA977_01920) ruvB 397088..398098 (-) 1011 WP_064434367.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AA977_RS01895 (AA977_01925) panB 398098..398910 (-) 813 WP_064434368.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AA977_RS01900 (AA977_01930) - 399057..399779 (+) 723 WP_064435178.1 hypothetical protein -
  AA977_RS01905 (AA977_01935) - 399769..400623 (+) 855 WP_064434369.1 outer membrane beta-barrel protein -
  AA977_RS01910 (AA977_01940) - 400632..401576 (+) 945 WP_064434370.1 outer membrane beta-barrel protein -
  AA977_RS01915 (AA977_01945) - 401586..402908 (+) 1323 WP_064434371.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37317.30 Da        Isoelectric Point: 5.5246

>NTDB_id=128428 AA977_RS01890 WP_064434367.1 397088..398098(-) (ruvB) [Helicobacter pylori strain K26A1]
MKERIVNLETLDFETSQEVSLRPDLWEDFIGQEKIKNNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
TYALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=128428 AA977_RS01890 WP_064434367.1 397088..398098(-) (ruvB) [Helicobacter pylori strain K26A1]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCCCAAGAAGTGAGTTTGCGCCCTGATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAACAACTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCGGGTTTGGGTAAAACCTCTATCAGTCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCTGCCATTCTCACTAATTTGCAAGCCAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGGTTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTTATTGGCGCTACTACT
AGAGCAGGAATGCTCTCTAACCCTTTGAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGTGAACT
GGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCTAGAATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCACTCGTTAAAAATTCAAGCTTGATG
GATTTAAATATCACTTTGCATGCTTTAAATGAGTTAGGCGTGAATGAATTAGGATTTGACGAAGCGGATTTGGCGTATTT
ATCCTTGTTGGCCAACGCTCAAGGAAAACCGGTTGGCTTGAACACGATTGCGGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGGATCGCCACGCCTAAA
ACTTACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482