Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AW22_RS15080 Genome accession   NZ_CP009300
Coordinates   2668939..2669652 (-) Length   237 a.a.
NCBI ID   WP_000429324.1    Uniprot ID   -
Organism   Bacillus cereus D17     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2663939..2674652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW22_RS15065 (AW22_2776) deoC 2665217..2665888 (-) 672 WP_001017446.1 deoxyribose-phosphate aldolase -
  AW22_RS15070 (AW22_2777) - 2666195..2667142 (-) 948 WP_000356562.1 sugar-binding transcriptional regulator -
  AW22_RS15075 (AW22_2778) - 2667502..2668938 (-) 1437 WP_000398538.1 sensor histidine kinase -
  AW22_RS15080 (AW22_2779) scnR 2668939..2669652 (-) 714 WP_000429324.1 response regulator transcription factor Regulator
  AW22_RS15085 (AW22_2780) - 2669982..2670296 (-) 315 WP_002002547.1 YxeA family protein -
  AW22_RS15090 (AW22_2781) - 2670354..2671085 (-) 732 WP_000830531.1 ABC transporter permease -
  AW22_RS15095 (AW22_2782) - 2671098..2671850 (-) 753 WP_000593662.1 ABC transporter permease -
  AW22_RS15100 (AW22_2783) - 2671847..2672764 (-) 918 WP_000539072.1 ATP-binding cassette domain-containing protein -
  AW22_RS32220 - 2672922..2673068 (+) 147 Protein_2802 Tn3 family transposase -
  AW22_RS15105 (AW22_2784) - 2673301..2673927 (-) 627 WP_000432996.1 LysE family translocator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27115.64 Da        Isoelectric Point: 5.8194

>NTDB_id=128360 AW22_RS15080 WP_000429324.1 2668939..2669652(-) (scnR) [Bacillus cereus D17]
MENLKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPDGDGFSLLSSIRKFSSTP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=128360 AW22_RS15080 WP_000429324.1 2668939..2669652(-) (scnR) [Bacillus cereus D17]
ATGGAAAATCTAAAAAACAAAAAAATATTAATTGTGGACGATGAACAAGAAATCAGAATAATGATTGAAAGATTTTTAAG
AAAAGAGGGATTTTTTCGCATTTATACTGCTGTTGACTGCGCTTCTGCTCTGTCATTTTGCCAGGTAGACAATCCAGATA
TCGTAATTCTGGATGTTATGTTACCGGATGGTGACGGATTTTCTTTACTGTCTTCCATTAGGAAGTTTTCGAGCACACCG
GTTCTTTTTCTCTCTGCGCGGGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACATGGTGAA
GCCATTTCTGCCACGTGAGCTGGTATTACGGCTCATGGCGATTTTGAAACGTGTATATTCTTCCTCGGTCACAGAGCGTC
TATCTATCTTTAGATTAGGAGAACAAATCGTTGATCTTGAAAGCGCTGTTGTACACAGAGGGCAGAAAGAGATGCCATTG
ACGGCAAAGGAGCATGCCATTCTTGTAAAGCTTTATGAAAATCAAGGACGTATCATTACAAATGATGCCTTATGTCAGGC
TGTTTGGGGAGATGACAGCTACGGTCTTGAGAATACTTTGATGGTTCATATCAGGCGGATACGTGAAAAGATTGAGCTGG
ATCCTTCCAAACCAATCTATCTTCTCACCTTCAGGGGATTGGGATATAAATTGCTAGTAAAGGAGACGTATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

97.468

0.481
  vicR Streptococcus mutans UA159

41.921

96.624

0.405
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401

Multiple sequence alignment