Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | EE66_RS04375 | Genome accession | NZ_CP011483 |
| Coordinates | 892198..893208 (+) | Length | 336 a.a. |
| NCBI ID | WP_064431124.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain DU15 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 887198..898208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EE66_RS04350 (EE66_04345) | - | 887385..888707 (-) | 1323 | WP_064431120.1 | M23 family metallopeptidase | - |
| EE66_RS04355 (EE66_04350) | - | 888717..889661 (-) | 945 | WP_064431121.1 | outer membrane beta-barrel protein | - |
| EE66_RS04360 (EE66_04355) | - | 889670..890524 (-) | 855 | WP_064431122.1 | outer membrane beta-barrel protein | - |
| EE66_RS04365 (EE66_04360) | - | 890514..891236 (-) | 723 | WP_064431597.1 | hypothetical protein | - |
| EE66_RS04370 (EE66_04365) | panB | 891385..892197 (+) | 813 | WP_064431123.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| EE66_RS04375 (EE66_04370) | ruvB | 892198..893208 (+) | 1011 | WP_064431124.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| EE66_RS04380 (EE66_04375) | tatB | 893276..893752 (+) | 477 | WP_064431125.1 | Sec-independent protein translocase protein TatB | - |
| EE66_RS04385 (EE66_04380) | tatC | 893745..894506 (+) | 762 | WP_064431126.1 | twin-arginine translocase subunit TatC | - |
| EE66_RS04390 (EE66_04385) | queA | 894507..895544 (+) | 1038 | WP_064431127.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| EE66_RS04395 (EE66_04390) | rsmG | 895541..896077 (+) | 537 | WP_025313712.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| EE66_RS04400 (EE66_04395) | - | 896071..896301 (+) | 231 | WP_064431128.1 | PP0621 family protein | - |
| EE66_RS04405 (EE66_04400) | - | 896304..896711 (+) | 408 | WP_064431129.1 | hypothetical protein | - |
| EE66_RS04415 (EE66_04410) | - | 896843..897445 (-) | 603 | WP_000291636.1 | outer membrane protein | - |
| EE66_RS04420 (EE66_04415) | - | 897736..898110 (+) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37365.41 Da Isoelectric Point: 6.0715
>NTDB_id=128302 EE66_RS04375 WP_064431124.1 892198..893208(+) (ruvB) [Helicobacter pylori strain DU15]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGMIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGMIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=128302 EE66_RS04375 WP_064431124.1 892198..893208(+) (ruvB) [Helicobacter pylori strain DU15]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGTCCAGCAGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCCTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCGGCATCTATGAGAGAAGATGAAGGCATGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGTCCAGCAGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCCTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCGGCATCTATGAGAGAAGATGAAGGCATGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |