Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JM49_RS03545 Genome accession   NZ_CP009290
Coordinates   778480..778992 (+) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain JD37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 773480..783992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM49_RS03530 (JM49_03575) bfr 773503..773967 (+) 465 WP_007924173.1 bacterioferritin -
  JM49_RS03535 (JM49_03580) uvrA 774061..776895 (-) 2835 WP_038575383.1 excinuclease ABC subunit UvrA -
  JM49_RS03540 (JM49_03585) - 777076..778470 (+) 1395 WP_038575385.1 MFS transporter -
  JM49_RS03545 (JM49_03590) ssb 778480..778992 (+) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  JM49_RS03550 (JM49_03595) - 779086..780141 (-) 1056 WP_038575387.1 hypothetical protein -
  JM49_RS03555 (JM49_03600) - 780455..782851 (-) 2397 WP_038575389.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=128302 JM49_RS03545 WP_009045846.1 778480..778992(+) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=128302 JM49_RS03545 WP_009045846.1 778480..778992(+) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCTGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCGCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment