Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   JV59_RS18925 Genome accession   NZ_CP009265
Coordinates   605329..607386 (+) Length   685 a.a.
NCBI ID   WP_235284726.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 600329..612386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS18915 (JV59_18635) - 601028..602158 (+) 1131 WP_040121568.1 exonuclease SbcCD subunit D -
  JV59_RS18920 (JV59_18640) - 602168..605209 (+) 3042 WP_040121569.1 AAA family ATPase -
  JV59_RS18925 (JV59_18645) cqsS 605329..607386 (+) 2058 WP_235284726.1 hybrid sensor histidine kinase/response regulator Regulator
  JV59_RS18930 (JV59_18650) cqsA 607421..608602 (-) 1182 WP_040121570.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JV59_RS18935 (JV59_18655) - 608819..609793 (-) 975 WP_006960883.1 TDT family transporter -
  JV59_RS18940 (JV59_18660) clcA 609912..611312 (-) 1401 WP_040121571.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78757.16 Da        Isoelectric Point: 5.3061

>NTDB_id=127875 JV59_RS18925 WP_235284726.1 605329..607386(+) (cqsS) [Vibrio coralliilyticus strain OCN014]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRYMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLFAFITVYGFNFSLAMEKIVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDEKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSSKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNGNHFQITVEIKCSDKNSTIVFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNTVDLELANNREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=127875 JV59_RS18925 WP_235284726.1 605329..607386(+) (cqsS) [Vibrio coralliilyticus strain OCN014]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGTCCTACTTATTCCCTCAGCCATACGAGAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTCCCTAAACACATACAGCGTTATATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCCTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTCGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTTGCTTTTATTACTGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGATTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTGTCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGCTAAGTGCACTGAAAGCATCGTTTGATGTCTTAAGTTCCTTGT
TACCTGATGAAAAATCCAAAACTGCTGAATTTTACTCAATGTCTCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTGATTCAGAATGGTAATGAAACCATTGATCTTCTGTTAACTTCTATTGATGAAAACCGTGTATCAAC
GTCGACATTCAGAAAGCATTCTTTGAAACGTGTTACGGAAGATTCTCTATCCAGCTTTGCTTACAAAAGCTCAAAGGACA
AACAGGCTGTTCAGTTCAAATGTGAACAGGATGCCGAAGTTTTTGGTAGTGATACGCTCATCAAGTATGCCTTGTATAAC
CTTCTAAAAAATGCATTTTATTATCAGAATGGCAATCACTTCCAAATTACTGTTGAAATAAAGTGCTCCGATAAAAACAG
TACCATCGTATTTCGGGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTCTATACCTTCG
GTAAGTCAGGCAGTTATGGCCTCGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGAAGAATCAGCTGTCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCATTCTGCGAGAGTCGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTCTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAACAGTCTTTTTACA
AAGGCTTTACCCTTAACACCGTTGACCTTGAGCTGGCAAACAATAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACCGAAGCGAGAAT
CGTGTTTCTCTACGATGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTCACCATTTACCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGTGTGGGCAAAACGATTGTCATTGCAGACGATAACCATTCACTCCGTACTTACACATCGATACTATTAGA
ACAGCAGGGTTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTGCAAAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCTAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATTCCGATTTTAGGCCACACTGGAGACTCTACATCTGTTGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.256

100

0.524

Multiple sequence alignment