Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   JV59_RS18930 Genome accession   NZ_CP009265
Coordinates   607421..608602 (-) Length   393 a.a.
NCBI ID   WP_040121570.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 602421..613602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS18925 (JV59_18645) cqsS 605329..607386 (+) 2058 WP_235284726.1 hybrid sensor histidine kinase/response regulator Regulator
  JV59_RS18930 (JV59_18650) cqsA 607421..608602 (-) 1182 WP_040121570.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JV59_RS18935 (JV59_18655) - 608819..609793 (-) 975 WP_006960883.1 TDT family transporter -
  JV59_RS18940 (JV59_18660) clcA 609912..611312 (-) 1401 WP_040121571.1 H(+)/Cl(-) exchange transporter ClcA -
  JV59_RS18945 (JV59_18665) - 611720..612697 (-) 978 WP_040121572.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44070.31 Da        Isoelectric Point: 6.6120

>NTDB_id=127876 JV59_RS18930 WP_040121570.1 607421..608602(-) (cqsA) [Vibrio coralliilyticus strain OCN014]
MNTLNHYPPLPDFINKKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMARKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSEYLKNNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFFESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQMAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=127876 JV59_RS18930 WP_040121570.1 607421..608602(-) (cqsA) [Vibrio coralliilyticus strain OCN014]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAAAAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGGCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGTTCCAAGCCTGAAGTAGAAGAAAAACTCGCCAAGTATGTAGGGTTTCAATCTTGCTT
ACTTTCTCAATCTGGTTGGGCGGCAAATACAGCCTTACTGCAAACCATTTGTGACAGCGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGAGCGAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAATTGATAAACAGACACGGCCCTGGAATCGTTCTTGTCGATTCAGTTTACAGTACCATAGGCACCATTGC
CCCCTTAGTAGAGCTGGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTTGATGAATCCCACTCCCTAGGTACTC
ACGGTAAACATGGCGCTGGTTTGTTACAAAGCTTAAAATTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCTATTTGGTGTAACAATCGCGCTAATGATTGTGTACCATTTGTGGCTTACCCCGCGAT
ATTTAGCTCTACGATGTTACCACATGAGTTGGATAGGCTCGATAAGACACTGGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGAGTATTTAAAAAACAACCTAGCAAATATCGGGCTAACTATTCGAAGTCAATCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTTGAATCACAAGGAATATTTGGTGC
GGTATTTTGTCGACCCGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGCGCTTGTCAGATGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

62.857

97.964

0.616

Multiple sequence alignment