Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IJ09_RS02990 Genome accession   NZ_CP009258
Coordinates   612412..613656 (-) Length   414 a.a.
NCBI ID   WP_012951603.1    Uniprot ID   -
Organism   Listeria monocytogenes strain Lm60     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607412..618656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ09_RS02965 (IJ09_02995) - 607431..607793 (-) 363 WP_012951604.1 RicAFT regulatory complex protein RicA family protein -
  IJ09_RS02970 (IJ09_03000) - 607810..608613 (-) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  IJ09_RS02975 (IJ09_03005) - 608619..609116 (-) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  IJ09_RS02980 (IJ09_03010) rny 609230..610792 (-) 1563 WP_003721904.1 ribonuclease Y -
  IJ09_RS02985 (IJ09_03015) recA 611093..612139 (-) 1047 WP_003732286.1 recombinase RecA Machinery gene
  IJ09_RS02990 (IJ09_03020) cinA 612412..613656 (-) 1245 WP_012951603.1 competence/damage-inducible protein A Machinery gene
  IJ09_RS02995 (IJ09_03025) pgsA 613725..614303 (-) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IJ09_RS03000 (IJ09_03030) - 614393..615322 (-) 930 WP_003732284.1 helix-turn-helix domain-containing protein -
  IJ09_RS03005 (IJ09_03035) ymfI 615373..616104 (-) 732 WP_012951602.1 elongation factor P 5-aminopentanone reductase -
  IJ09_RS03010 (IJ09_03040) yfmH 616196..617482 (-) 1287 WP_003732282.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45632.82 Da        Isoelectric Point: 4.8669

>NTDB_id=127744 IJ09_RS02990 WP_012951603.1 612412..613656(-) (cinA) [Listeria monocytogenes strain Lm60]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRSMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=127744 IJ09_RS02990 WP_012951603.1 612412..613656(-) (cinA) [Listeria monocytogenes strain Lm60]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAAGCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

50.367

98.792

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment