Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IX87_RS13140 Genome accession   NZ_CP009257
Coordinates   2592881..2593462 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain AB30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2587881..2598462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS13115 (IX87_13415) - 2587902..2589401 (+) 1500 WP_024437653.1 PLP-dependent aminotransferase family protein -
  IX87_RS13120 (IX87_13420) - 2589460..2590902 (-) 1443 WP_000718864.1 amino acid permease -
  IX87_RS13125 (IX87_13425) - 2591208..2591756 (-) 549 WP_000081860.1 helix-turn-helix domain-containing protein -
  IX87_RS13130 (IX87_13430) - 2591825..2592520 (+) 696 WP_016685054.1 AzlC family ABC transporter permease -
  IX87_RS13135 (IX87_13435) - 2592517..2592840 (+) 324 WP_000082714.1 AzlD domain-containing protein -
  IX87_RS13140 (IX87_13440) ssb 2592881..2593462 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  IX87_RS13145 (IX87_13445) - 2593514..2594878 (-) 1365 WP_000980460.1 MFS transporter -
  IX87_RS13150 (IX87_13450) - 2595025..2596107 (-) 1083 WP_000680213.1 DUF475 domain-containing protein -
  IX87_RS13155 (IX87_13455) tenA 2596370..2597044 (+) 675 WP_000899418.1 thiaminase II -
  IX87_RS13160 (IX87_13460) - 2597094..2597435 (-) 342 WP_000263327.1 GlpM family protein -
  IX87_RS13165 (IX87_13465) - 2597488..2597841 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=127715 IX87_RS13140 WP_001215080.1 2592881..2593462(-) (ssb) [Acinetobacter baumannii strain AB30]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=127715 IX87_RS13140 WP_001215080.1 2592881..2593462(-) (ssb) [Acinetobacter baumannii strain AB30]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394

Multiple sequence alignment