Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IX87_RS12345 Genome accession   NZ_CP009257
Coordinates   2436677..2437495 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2431677..2442495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS12330 (IX87_12600) pilE 2431894..2432319 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  IX87_RS12335 (IX87_12605) pilY2 2432316..2432798 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  IX87_RS12340 (IX87_12610) pilY1 2432811..2436665 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  IX87_RS12345 (IX87_12615) pilX 2436677..2437495 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IX87_RS12350 (IX87_12620) pilW 2437492..2438493 (-) 1002 WP_042791529.1 PilW family protein Machinery gene
  IX87_RS12355 (IX87_12625) pilV 2438494..2439054 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IX87_RS12360 (IX87_12630) fimU 2439048..2439521 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IX87_RS12365 (IX87_12635) ispH 2439691..2440641 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IX87_RS12370 (IX87_12640) gmk 2440764..2441393 (+) 630 WP_000015937.1 guanylate kinase -
  IX87_RS12375 (IX87_12645) rpoZ 2441466..2441744 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IX87_RS22875 - 2441783..2441913 (+) 131 Protein_2417 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=127705 IX87_RS12345 WP_000149374.1 2436677..2437495(-) (pilX) [Acinetobacter baumannii strain AB30]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=127705 IX87_RS12345 WP_000149374.1 2436677..2437495(-) (pilX) [Acinetobacter baumannii strain AB30]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment