Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IX87_RS12360 Genome accession   NZ_CP009257
Coordinates   2439048..2439521 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2434048..2444521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS12345 (IX87_12615) pilX 2436677..2437495 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IX87_RS12350 (IX87_12620) pilW 2437492..2438493 (-) 1002 WP_042791529.1 PilW family protein Machinery gene
  IX87_RS12355 (IX87_12625) pilV 2438494..2439054 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IX87_RS12360 (IX87_12630) fimU 2439048..2439521 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IX87_RS12365 (IX87_12635) ispH 2439691..2440641 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IX87_RS12370 (IX87_12640) gmk 2440764..2441393 (+) 630 WP_000015937.1 guanylate kinase -
  IX87_RS12375 (IX87_12645) rpoZ 2441466..2441744 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IX87_RS22875 - 2441783..2441913 (+) 131 Protein_2417 hypothetical protein -
  IX87_RS12380 (IX87_12650) - 2441953..2444058 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=127708 IX87_RS12360 WP_001214065.1 2439048..2439521(-) (fimU) [Acinetobacter baumannii strain AB30]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=127708 IX87_RS12360 WP_001214065.1 2439048..2439521(-) (fimU) [Acinetobacter baumannii strain AB30]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment