Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   IX87_RS12350 Genome accession   NZ_CP009257
Coordinates   2437492..2438493 (-) Length   333 a.a.
NCBI ID   WP_042791529.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2432492..2443493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS12340 (IX87_12610) pilY1 2432811..2436665 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  IX87_RS12345 (IX87_12615) pilX 2436677..2437495 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IX87_RS12350 (IX87_12620) pilW 2437492..2438493 (-) 1002 WP_042791529.1 PilW family protein Machinery gene
  IX87_RS12355 (IX87_12625) pilV 2438494..2439054 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IX87_RS12360 (IX87_12630) fimU 2439048..2439521 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IX87_RS12365 (IX87_12635) ispH 2439691..2440641 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IX87_RS12370 (IX87_12640) gmk 2440764..2441393 (+) 630 WP_000015937.1 guanylate kinase -
  IX87_RS12375 (IX87_12645) rpoZ 2441466..2441744 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IX87_RS22875 - 2441783..2441913 (+) 131 Protein_2417 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35859.56 Da        Isoelectric Point: 5.7207

>NTDB_id=127706 IX87_RS12350 WP_042791529.1 2437492..2438493(-) (pilW) [Acinetobacter baumannii strain AB30]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCESVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=127706 IX87_RS12350 WP_042791529.1 2437492..2438493(-) (pilW) [Acinetobacter baumannii strain AB30]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ATAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAAGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment