Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LM850658_RS00190 Genome accession   NZ_CP009242
Coordinates   42037..42573 (+) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes strain LM850658     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 37037..47573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM850658_RS00170 (LM850658_00175) - 38166..39251 (+) 1086 WP_012582217.1 SIS domain-containing protein -
  LM850658_RS00175 (LM850658_00180) - 39440..40099 (+) 660 WP_003721665.1 DedA family protein -
  LM850658_RS00180 (LM850658_00185) arcA 40177..41409 (+) 1233 WP_012582216.1 arginine deiminase -
  LM850658_RS00185 (LM850658_00190) rpsF 41688..41981 (+) 294 WP_003721667.1 30S ribosomal protein S6 -
  LM850658_RS00190 (LM850658_00195) ssbA 42037..42573 (+) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  LM850658_RS00195 (LM850658_00200) rpsR 42617..42856 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LM850658_RS00200 (LM850658_00205) - 43009..43620 (+) 612 WP_050897575.1 PepSY domain-containing protein -
  LM850658_RS00205 (LM850658_00210) - 43878..44492 (+) 615 WP_003728981.1 accessory gene regulator ArgB-like protein -
  LM850658_RS00210 (LM850658_00215) - 44476..44637 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  LM850658_RS00215 (LM850658_00220) - 44733..46028 (+) 1296 WP_014588973.1 sensor histidine kinase -
  LM850658_RS00220 (LM850658_00225) - 46047..46775 (+) 729 WP_003728979.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=127558 LM850658_RS00190 WP_003721668.1 42037..42573(+) (ssbA) [Listeria monocytogenes strain LM850658]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=127558 LM850658_RS00190 WP_003721668.1 42037..42573(+) (ssbA) [Listeria monocytogenes strain LM850658]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCAGGCGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACTTTCACTAACCAACAAGGAGAACGAGAAGCCGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGTCGTGTTCAAACTCGT
AATTACGAGGGGAACGACGGCAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGCGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTATAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365

Multiple sequence alignment