Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NJ8700_RS10285 Genome accession   NZ_CP009230
Coordinates   2165936..2166412 (+) Length   158 a.a.
NCBI ID   WP_005701838.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2160936..2171412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ8700_RS10265 (NJ8700_10475) secM 2161689..2162006 (-) 318 WP_005701843.1 secA translation cis-regulator SecM -
  NJ8700_RS10270 (NJ8700_10480) - 2162098..2162409 (+) 312 WP_005701842.1 DciA family protein -
  NJ8700_RS10275 (NJ8700_10485) - 2162447..2162863 (+) 417 WP_005701841.1 MerR family transcriptional regulator -
  NJ8700_RS10280 (NJ8700_10490) uvrA 2162935..2165766 (-) 2832 WP_012771957.1 excinuclease ABC subunit UvrA -
  NJ8700_RS10285 (NJ8700_10495) ssb 2165936..2166412 (+) 477 WP_005701838.1 single-stranded DNA-binding protein Machinery gene
  NJ8700_RS11775 - 2166960..2167376 (-) 417 WP_005701837.1 DapH/DapD/GlmU-related protein -
  NJ8700_RS11565 - 2167355..2167528 (-) 174 WP_005701836.1 hypothetical protein -
  NJ8700_RS10295 (NJ8700_10510) - 2167528..2167872 (-) 345 WP_005701835.1 cyclophilin-like fold protein -
  NJ8700_RS10300 (NJ8700_10515) - 2168004..2169152 (-) 1149 WP_005701834.1 alpha/beta hydrolase -
  NJ8700_RS10305 (NJ8700_10520) - 2169274..2170179 (+) 906 WP_005701833.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.48 Da        Isoelectric Point: 5.3111

>NTDB_id=127417 NJ8700_RS10285 WP_005701838.1 2165936..2166412(+) (ssb) [Aggregatibacter aphrophilus NJ8700]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPSYPSQSQSAPRSAPASKPVAEAPMDNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=127417 NJ8700_RS10285 WP_005701838.1 2165936..2166412(+) (ssb) [Aggregatibacter aphrophilus NJ8700]
ATGGCTGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGCACCATGCCGAACGGCGAAGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAACACCGGGGAACGTCGTGAAGTCACCGAATGGC
ACCGCATTGTGTTCTATCGTCGTCAGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTAAAGTCTATGTTGAAGGG
CGTTTAAGAACCCGCAAATGGCAAGATCAAAACGGCCAAGATCGCTACACCACAGAAATTCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGCTCTGATCGTCAATCCGGCGGCTACGCGCCGGCAGCACAGCCAAGCTACCCAAGCCAATCACAAAGCG
CGCCACGTTCCGCCCCGGCAAGTAAACCGGTAGCCGAAGCACCGATGGATAACTTTGATGATGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.333

100

0.778
  ssb Vibrio cholerae strain A1552

57.225

100

0.627
  ssb Neisseria gonorrhoeae MS11

48.851

100

0.538
  ssb Neisseria meningitidis MC58

46.591

100

0.519

Multiple sequence alignment