Detailed information NTG0127400

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: NJ8700_RS04705
• Genome accession: NZ_CP009230
• Coordinates: 1050529..1051020 (+)
• Length: 163 a.a.
• NCBI ID: WP_005700758.1
• Uniprot ID: -
• Organism: Aggregatibacter aphrophilus NJ8700
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1045529..1056020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NJ8700_RS11650 (NJ8700_04785)	-	1045753..1046148 (+)	396	WP_044055244.1	STY4528 family pathogenicity island replication protein	-
NJ8700_RS11655	-	1046157..1046474 (+)	318	WP_238524202.1	hypothetical protein	-
NJ8700_RS11660 (NJ8700_04790)	-	1046539..1046889 (+)	351	WP_005700746.1	hypothetical protein	-
NJ8700_RS04670 (NJ8700_04800)	-	1047180..1047950 (+)	771	WP_032996267.1	PFL_4669 family integrating conjugative element protein	-
NJ8700_RS04675 (NJ8700_04805)	-	1048111..1048596 (+)	486	WP_005700750.1	DUF3158 family protein	-
NJ8700_RS04680 (NJ8700_04810)	-	1048731..1048973 (+)	243	WP_005700751.1	hypothetical protein	-
NJ8700_RS04685 (NJ8700_04815)	-	1049164..1049427 (+)	264	WP_253272207.1	hypothetical protein	-
NJ8700_RS04690 (NJ8700_04820)	-	1049467..1049733 (-)	267	WP_005700753.1	hypothetical protein	-
NJ8700_RS04695 (NJ8700_04825)	-	1049915..1050124 (+)	210	WP_005700756.1	hypothetical protein	-
NJ8700_RS04700 (NJ8700_04830)	-	1050131..1050322 (-)	192	WP_005700757.1	hypothetical protein	-
NJ8700_RS04705 (NJ8700_04835)	ssb	1050529..1051020 (+)	492	WP_005700758.1	single-stranded DNA-binding protein	Machinery gene
NJ8700_RS04710 (NJ8700_04840)	-	1051093..1051596 (+)	504	WP_005700759.1	membrane lipoprotein lipid attachment site-containing protein	-
NJ8700_RS04715 (NJ8700_04845)	-	1051753..1051950 (+)	198	WP_005700760.1	hypothetical protein	-
NJ8700_RS04720 (NJ8700_04850)	-	1051971..1052462 (+)	492	WP_005700761.1	hypothetical protein	-
NJ8700_RS04725 (NJ8700_04855)	-	1052455..1053606 (+)	1152	WP_005700762.1	DNA cytosine methyltransferase	-
NJ8700_RS04730 (NJ8700_04860)	-	1053627..1054031 (+)	405	WP_005700763.1	hypothetical protein	-
NJ8700_RS04735 (NJ8700_04865)	-	1054000..1054989 (-)	990	WP_005700764.1	hypothetical protein	-
NJ8700_RS04740 (NJ8700_04870)	-	1055121..1055324 (+)	204	WP_012771584.1	hypothetical protein	-
NJ8700_RS04745 (NJ8700_04875)	-	1055311..1055559 (+)	249	WP_005700766.1	hypothetical protein	-

Sequence

Protein

• Length: 163 a.a.
• Molecular weight: 18293.51 Da
• Isoelectric Point: 6.8740

>NTDB_id=127400 NJ8700_RS04705 WP_005700758.1 1050529..1051020(+) (ssb) [Aggregatibacter aphrophilus NJ8700]
MAGVNKVIIVGNLGNEPEMRTMPNGEAVANISVATSEAWIDKNTGERREVTEWHRIVFYRRQAEICGEYLHKGSKVYIEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDNRPSNSLAQTSGTNTGPKQGDKPVPSQQRMDNFDDDIPFAPIAHGLTKSAV
HIL

Nucleotide

• Length: 492 bp

>NTDB_id=127400 NJ8700_RS04705 WP_005700758.1 1050529..1051020(+) (ssb) [Aggregatibacter aphrophilus NJ8700]
ATGGCTGGAGTAAATAAAGTTATTATCGTTGGTAATCTTGGAAATGAACCGGAAATGAGAACCATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTAGCAACCAGCGAAGCTTGGATTGACAAAAATACCGGGGAACGCCGTGAGGTAACTGAATGGC
ACCGTATTGTATTTTATCGTCGCCAGGCAGAAATATGCGGAGAATACTTACACAAAGGCTCGAAGGTATACATTGAGGGG
CGTTTAAAAACTCGGAAGTGGCAAGACCAGAATGGTCAGGACCGCTATACCACAGAAATCCAAGGTGATGTTTTACAAAT
GCTCGACAATCGTCCGTCTAATTCATTAGCCCAAACATCCGGAACAAATACCGGACCGAAACAGGGAGACAAACCAGTAC
CATCACAACAGCGGATGGATAATTTTGACGATGACATTCCCTTTGCGCCAATTGCTCATGGGTTAACCAAAAGTGCGGTG
CATATTTTATAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	63.889	100	0.706
ssb	Vibrio cholerae strain A1552	50.289	100	0.534
ssb	Neisseria meningitidis MC58	42.197	100	0.448
ssb	Neisseria gonorrhoeae MS11	42.197	100	0.448