Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JL26_RS04005 | Genome accession | NZ_CP009158 |
| Coordinates | 762396..762938 (-) | Length | 180 a.a. |
| NCBI ID | WP_021115958.1 | Uniprot ID | A0A836YZ57 |
| Organism | Glaesserella parasuis strain SH03 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 757396..767938
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL26_RS03975 (JL26_04140) | argF | 757583..758593 (-) | 1011 | WP_038513972.1 | ornithine carbamoyltransferase | - |
| JL26_RS03980 (JL26_04145) | - | 758742..759020 (+) | 279 | WP_010786777.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JL26_RS03985 (JL26_04150) | - | 759031..759303 (+) | 273 | WP_005712616.1 | HigA family addiction module antitoxin | - |
| JL26_RS03990 (JL26_04155) | rhlB | 759367..760587 (+) | 1221 | WP_038513975.1 | ATP-dependent RNA helicase RhlB | - |
| JL26_RS03995 (JL26_04160) | - | 760597..760905 (+) | 309 | Protein_816 | helicase HerA-like domain-containing protein | - |
| JL26_RS04000 (JL26_04165) | - | 760977..762191 (-) | 1215 | WP_080716934.1 | ATP-binding protein | - |
| JL26_RS04005 (JL26_04175) | ssb | 762396..762938 (-) | 543 | WP_021115958.1 | single-stranded DNA-binding protein | Machinery gene |
| JL26_RS04010 (JL26_04180) | uvrA | 763240..766068 (+) | 2829 | WP_038513981.1 | excinuclease ABC subunit UvrA | - |
| JL26_RS04015 (JL26_04185) | - | 766152..766532 (+) | 381 | WP_010786782.1 | YacL family protein | - |
| JL26_RS04020 (JL26_04190) | - | 766498..766749 (+) | 252 | WP_035491778.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19938.78 Da Isoelectric Point: 4.9833
>NTDB_id=127116 JL26_RS04005 WP_021115958.1 762396..762938(-) (ssb) [Glaesserella parasuis strain SH03]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=127116 JL26_RS04005 WP_021115958.1 762396..762938(-) (ssb) [Glaesserella parasuis strain SH03]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTCTAA
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
100 |
100 |
1 |
| ssb | Vibrio cholerae strain A1552 |
50.265 |
100 |
0.528 |
| ssb | Neisseria gonorrhoeae MS11 |
44.505 |
100 |
0.45 |
| ssb | Neisseria meningitidis MC58 |
43.956 |
100 |
0.444 |