Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JL26_RS00205 | Genome accession | NZ_CP009158 |
| Coordinates | 39082..39561 (-) | Length | 159 a.a. |
| NCBI ID | WP_038513288.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH03 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 27879..55332 | 39082..39561 | within | 0 |
Gene organization within MGE regions
Location: 27879..55332
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL26_RS00125 (JL26_00125) | - | 27879..28670 (-) | 792 | WP_038513274.1 | ABC transporter ATP-binding protein | - |
| JL26_RS00130 (JL26_00130) | - | 28670..29605 (-) | 936 | WP_016527541.1 | ABC transporter permease | - |
| JL26_RS00135 (JL26_00135) | - | 29799..30017 (+) | 219 | WP_005712153.1 | YgjV family protein | - |
| JL26_RS12255 | - | 30131..30271 (-) | 141 | WP_005712155.1 | hypothetical protein | - |
| JL26_RS00140 (JL26_00145) | mltF | 30296..31717 (-) | 1422 | WP_016527542.1 | membrane-bound lytic murein transglycosylase MltF | - |
| JL26_RS00145 (JL26_00150) | folD | 31845..32699 (-) | 855 | WP_005712159.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| JL26_RS00160 (JL26_00165) | - | 33105..34160 (-) | 1056 | WP_005712160.1 | tyrosine-type recombinase/integrase | - |
| JL26_RS11545 | - | 34064..34369 (-) | 306 | WP_016527543.1 | helix-turn-helix domain-containing protein | - |
| JL26_RS00165 (JL26_00170) | - | 34459..35262 (-) | 804 | WP_038513278.1 | BRO family protein | - |
| JL26_RS00170 (JL26_00175) | - | 35616..36071 (-) | 456 | WP_015939641.1 | hypothetical protein | - |
| JL26_RS00175 (JL26_00180) | - | 36055..36246 (-) | 192 | WP_198351651.1 | hypothetical protein | - |
| JL26_RS00180 (JL26_00185) | - | 36521..36901 (-) | 381 | WP_005712166.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JL26_RS00185 (JL26_00190) | - | 37267..37479 (+) | 213 | WP_010786204.1 | ribbon-helix-helix protein, CopG family | - |
| JL26_RS00190 (JL26_00195) | - | 37498..37761 (-) | 264 | WP_005712171.1 | hypothetical protein | - |
| JL26_RS00195 (JL26_00200) | - | 37785..38504 (-) | 720 | WP_038513285.1 | hypothetical protein | - |
| JL26_RS00200 (JL26_00205) | - | 38848..39036 (+) | 189 | WP_010786201.1 | hypothetical protein | - |
| JL26_RS00205 (JL26_00210) | ssb | 39082..39561 (-) | 480 | WP_038513288.1 | single-stranded DNA-binding protein | Machinery gene |
| JL26_RS00210 (JL26_00215) | - | 39561..40220 (-) | 660 | WP_038515078.1 | translocation protein TolB precursor | - |
| JL26_RS00215 (JL26_00220) | - | 40283..41200 (-) | 918 | WP_038513294.1 | recombinase RecT | - |
| JL26_RS00220 (JL26_00225) | - | 41197..41403 (-) | 207 | WP_038513297.1 | hypothetical protein | - |
| JL26_RS00225 (JL26_00230) | - | 41390..41929 (-) | 540 | WP_038513299.1 | hypothetical protein | - |
| JL26_RS00230 (JL26_00235) | - | 41926..42246 (-) | 321 | WP_021115189.1 | hypothetical protein | - |
| JL26_RS00235 (JL26_00240) | - | 42327..43130 (-) | 804 | WP_038513306.1 | BRO family protein | - |
| JL26_RS00240 (JL26_00245) | - | 43726..43914 (+) | 189 | WP_005714998.1 | hypothetical protein | - |
| JL26_RS00245 (JL26_00250) | - | 44024..44356 (+) | 333 | WP_021118451.1 | hypothetical protein | - |
| JL26_RS00250 (JL26_00255) | - | 44429..45070 (-) | 642 | WP_038513316.1 | DUF3560 domain-containing protein | - |
| JL26_RS00260 (JL26_00265) | - | 45488..45709 (-) | 222 | WP_016527867.1 | hypothetical protein | - |
| JL26_RS00265 (JL26_00270) | - | 45724..45909 (+) | 186 | WP_020997221.1 | YegP family protein | - |
| JL26_RS12390 | - | 45935..46378 (-) | 444 | WP_232422145.1 | hypothetical protein | - |
| JL26_RS00275 | - | 46784..47623 (-) | 840 | WP_131262422.1 | Abi family protein | - |
| JL26_RS00280 (JL26_00285) | - | 47758..48171 (-) | 414 | WP_021114968.1 | hypothetical protein | - |
| JL26_RS00285 (JL26_00290) | - | 48235..48888 (-) | 654 | WP_038513322.1 | LexA family protein | - |
| JL26_RS00290 (JL26_00295) | - | 49024..49230 (+) | 207 | WP_012621794.1 | helix-turn-helix transcriptional regulator | - |
| JL26_RS12755 | - | 49344..49526 (+) | 183 | Protein_57 | hypothetical protein | - |
| JL26_RS00295 (JL26_00300) | - | 49570..49752 (+) | 183 | WP_016528087.1 | hypothetical protein | - |
| JL26_RS00300 (JL26_00305) | - | 49730..50620 (+) | 891 | WP_026916583.1 | replication protein | - |
| JL26_RS00305 (JL26_00310) | - | 50620..51975 (+) | 1356 | WP_026916582.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| JL26_RS00310 (JL26_00315) | - | 52074..52502 (+) | 429 | WP_038515080.1 | recombination protein NinB | - |
| JL26_RS00315 (JL26_00320) | - | 52536..52949 (-) | 414 | WP_005715065.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| JL26_RS00320 (JL26_00325) | - | 52976..53158 (-) | 183 | WP_005715063.1 | type II toxin-antitoxin system HicA family toxin | - |
| JL26_RS12260 | - | 53257..53433 (+) | 177 | WP_016528082.1 | hypothetical protein | - |
| JL26_RS00325 (JL26_00335) | - | 53405..53983 (+) | 579 | WP_038513329.1 | recombination protein NinG | - |
| JL26_RS11295 | - | 53973..54437 (+) | 465 | WP_051617452.1 | antiterminator Q family protein | - |
| JL26_RS11300 | - | 54468..55332 (+) | 865 | Protein_67 | IS256 family transposase | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 18061.15 Da Isoelectric Point: 5.9697
>NTDB_id=127111 JL26_RS00205 WP_038513288.1 39082..39561(-) (ssb) [Glaesserella parasuis strain SH03]
MAGVNKVIIVGNLGNNPDMRTMPNGDPVVKISVATSEEWTDKQTGEKKQNTEWHSIIAFRKLAEIMGQYLKKGSKVYIEG
KLRTRKWQAQDGTDRYTTEIIADKLEMLSSSQGGNSNNNWAQEPQGKPKQQQQTKQKEWDGYADDERLPANNFDDEIPF
MAGVNKVIIVGNLGNNPDMRTMPNGDPVVKISVATSEEWTDKQTGEKKQNTEWHSIIAFRKLAEIMGQYLKKGSKVYIEG
KLRTRKWQAQDGTDRYTTEIIADKLEMLSSSQGGNSNNNWAQEPQGKPKQQQQTKQKEWDGYADDERLPANNFDDEIPF
Nucleotide
Download Length: 480 bp
>NTDB_id=127111 JL26_RS00205 WP_038513288.1 39082..39561(-) (ssb) [Glaesserella parasuis strain SH03]
ATGGCAGGCGTGAATAAAGTAATCATAGTCGGCAATCTCGGCAATAACCCTGATATGCGTACAATGCCAAACGGTGACCC
CGTCGTTAAAATTAGTGTCGCCACATCGGAAGAATGGACCGACAAACAAACGGGCGAGAAAAAGCAAAATACCGAATGGC
ACAGCATTATCGCTTTTAGGAAATTAGCCGAAATTATGGGGCAATACCTAAAGAAAGGCTCTAAGGTTTACATTGAAGGG
AAACTTCGTACCCGCAAATGGCAAGCACAAGACGGTACAGACCGCTATACCACCGAGATTATCGCCGACAAACTCGAAAT
GCTCAGTAGTTCGCAAGGTGGTAACAGTAACAACAACTGGGCACAAGAACCACAGGGTAAGCCAAAACAGCAACAACAAA
CAAAACAGAAAGAATGGGACGGTTATGCTGATGATGAACGTCTGCCAGCAAATAACTTTGATGATGAAATACCGTTTTGA
ATGGCAGGCGTGAATAAAGTAATCATAGTCGGCAATCTCGGCAATAACCCTGATATGCGTACAATGCCAAACGGTGACCC
CGTCGTTAAAATTAGTGTCGCCACATCGGAAGAATGGACCGACAAACAAACGGGCGAGAAAAAGCAAAATACCGAATGGC
ACAGCATTATCGCTTTTAGGAAATTAGCCGAAATTATGGGGCAATACCTAAAGAAAGGCTCTAAGGTTTACATTGAAGGG
AAACTTCGTACCCGCAAATGGCAAGCACAAGACGGTACAGACCGCTATACCACCGAGATTATCGCCGACAAACTCGAAAT
GCTCAGTAGTTCGCAAGGTGGTAACAGTAACAACAACTGGGCACAAGAACCACAGGGTAAGCCAAAACAGCAACAACAAA
CAAAACAGAAAGAATGGGACGGTTATGCTGATGATGAACGTCTGCCAGCAAATAACTTTGATGATGAAATACCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53.261 |
100 |
0.616 |
| ssb | Vibrio cholerae strain A1552 |
46.552 |
100 |
0.509 |
| ssb | Neisseria gonorrhoeae MS11 |
39.884 |
100 |
0.434 |
| ssb | Neisseria meningitidis MC58 |
39.884 |
100 |
0.434 |