Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GZ59_RS04405 | Genome accession | NZ_CP009125 |
| Coordinates | 987707..988255 (+) | Length | 182 a.a. |
| NCBI ID | WP_039290400.1 | Uniprot ID | M4GYR9 |
| Organism | Pectobacterium atrosepticum strain 21A | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 958887..987642 | 987707..988255 | flank | 65 |
Gene organization within MGE regions
Location: 958887..988255
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZ59_RS04255 (GZ59_08830) | - | 958887..959660 (+) | 774 | WP_039290380.1 | winged helix-turn-helix domain-containing protein | - |
| GZ59_RS04260 (GZ59_08840) | - | 959776..960117 (+) | 342 | WP_226302337.1 | FidL | - |
| GZ59_RS04265 (GZ59_08850) | - | 960179..960751 (-) | 573 | WP_011092548.1 | TetR/AcrR family transcriptional regulator | - |
| GZ59_RS04270 (GZ59_08860) | - | 960844..961737 (+) | 894 | WP_011092549.1 | ABC transporter six-transmembrane domain-containing protein | - |
| GZ59_RS04275 (GZ59_08870) | cueP | 961843..962379 (-) | 537 | WP_373365831.1 | copper-binding periplasmic metallochaperone CueP | - |
| GZ59_RS04280 (GZ59_08880) | - | 962631..963395 (-) | 765 | WP_011092551.1 | sulfite exporter TauE/SafE family protein | - |
| GZ59_RS04285 (GZ59_08890) | - | 963711..964310 (-) | 600 | WP_011092552.1 | TetR/AcrR family transcriptional regulator | - |
| GZ59_RS04290 (GZ59_08900) | - | 964428..965015 (+) | 588 | WP_011092553.1 | NAD(P)H-dependent oxidoreductase | - |
| GZ59_RS04295 (GZ59_08910) | - | 966072..966578 (-) | 507 | WP_011092556.1 | GNAT family N-acetyltransferase | - |
| GZ59_RS04300 (GZ59_08920) | - | 966776..967675 (-) | 900 | WP_011092557.1 | LysR family transcriptional regulator | - |
| GZ59_RS04305 (GZ59_08930) | - | 967774..968301 (+) | 528 | WP_011092558.1 | GNAT family N-acetyltransferase | - |
| GZ59_RS04310 (GZ59_08940) | - | 968298..969485 (+) | 1188 | WP_011092559.1 | MFS transporter | - |
| GZ59_RS23810 | - | 969483..969653 (-) | 171 | Protein_845 | XRE family transcriptional regulator | - |
| GZ59_RS22615 | - | 969679..969804 (+) | 126 | Protein_846 | helix-turn-helix domain-containing protein | - |
| GZ59_RS04315 (GZ59_08960) | - | 970002..970295 (+) | 294 | WP_011092560.1 | DUF1778 domain-containing protein | - |
| GZ59_RS04320 (GZ59_08970) | - | 970292..970782 (+) | 491 | Protein_848 | GNAT family N-acetyltransferase | - |
| GZ59_RS04325 (GZ59_08980) | - | 971136..973742 (+) | 2607 | WP_011092562.1 | AAA family ATPase | - |
| GZ59_RS04335 (GZ59_08990) | ccdA | 974187..974405 (-) | 219 | WP_011092563.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| GZ59_RS04340 (GZ59_09000) | - | 974420..974668 (-) | 249 | WP_011092564.1 | helix-turn-helix domain-containing protein | - |
| GZ59_RS04345 (GZ59_09010) | - | 974753..975007 (-) | 255 | WP_011092565.1 | helix-turn-helix domain-containing protein | - |
| GZ59_RS22620 (GZ59_09020) | - | 975111..975353 (+) | 243 | WP_011092566.1 | helix-turn-helix domain-containing protein | - |
| GZ59_RS04350 (GZ59_09030) | - | 975531..976418 (+) | 888 | WP_011092136.1 | ParA family protein | - |
| GZ59_RS22405 (GZ59_09040) | - | 976432..976869 (-) | 438 | WP_051122321.1 | hypothetical protein | - |
| GZ59_RS04360 (GZ59_09050) | - | 977097..977489 (+) | 393 | WP_011092138.1 | hypothetical protein | - |
| GZ59_RS04365 (GZ59_09060) | dnaB-PI | 977482..978849 (+) | 1368 | WP_048018345.1 | SPI-7-type island replicative DNA helicase | - |
| GZ59_RS04370 (GZ59_09070) | - | 978849..980573 (+) | 1725 | WP_039290390.1 | ParB family protein | - |
| GZ59_RS04375 (GZ59_09080) | - | 980577..980849 (+) | 273 | WP_011092141.1 | hypothetical protein | - |
| GZ59_RS04380 (GZ59_09090) | - | 980874..981488 (+) | 615 | WP_011092142.1 | DUF2857 domain-containing protein | - |
| GZ59_RS23815 (GZ59_09100) | - | 981497..981751 (+) | 255 | WP_011092143.1 | hypothetical protein | - |
| GZ59_RS04385 (GZ59_09110) | - | 981924..983120 (+) | 1197 | WP_011092144.1 | STY4528 family pathogenicity island replication protein | - |
| GZ59_RS04390 (GZ59_09120) | - | 983490..984287 (+) | 798 | WP_039290394.1 | PFL_4669 family integrating conjugative element protein | - |
| GZ59_RS04395 (GZ59_09130) | - | 984287..986302 (+) | 2016 | WP_039290396.1 | DNA topoisomerase III | - |
| GZ59_RS04400 (GZ59_09150) | - | 987151..987642 (+) | 492 | WP_011092149.1 | STY4534 family ICE replication protein | - |
| GZ59_RS04405 (GZ59_09160) | ssb | 987707..988255 (+) | 549 | WP_039290400.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19684.06 Da Isoelectric Point: 8.0013
>NTDB_id=126982 GZ59_RS04405 WP_039290400.1 987707..988255(+) (ssb) [Pectobacterium atrosepticum strain 21A]
MASRGVNKVILVGHLGQDPEIRYMPNGGAVANMTLATSETWRDKQSGEQKEKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWADQAGVERYTTEVVVNVGGTLQMLGSRPNAGSNNQSAASTAWGKPQQPVAPAQSGPPQSQRSAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
MASRGVNKVILVGHLGQDPEIRYMPNGGAVANMTLATSETWRDKQSGEQKEKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWADQAGVERYTTEVVVNVGGTLQMLGSRPNAGSNNQSAASTAWGKPQQPVAPAQSGPPQSQRSAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
Nucleotide
Download Length: 549 bp
>NTDB_id=126982 GZ59_RS04405 WP_039290400.1 987707..988255(+) (ssb) [Pectobacterium atrosepticum strain 21A]
ATGGCTTCACGCGGTGTTAACAAAGTTATCTTAGTTGGCCATCTCGGTCAGGATCCTGAAATTCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATGACATTAGCGACCTCTGAAACCTGGCGGGATAAGCAAAGTGGTGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATTTTCGGGAAACTCGCTGAAGTCGCTGGCGAATATCTTCGCAAAGGCTCTCAGGTTTACATT
GAAGGTTCATTACAAACGCGTAAATGGGCTGATCAGGCTGGGGTAGAACGCTATACGACTGAAGTTGTCGTTAACGTTGG
CGGCACATTGCAGATGCTAGGCTCTCGTCCTAACGCTGGAAGTAACAACCAAAGTGCAGCCAGTACTGCATGGGGAAAAC
CTCAGCAGCCAGTTGCACCGGCGCAGAGTGGTCCCCCTCAGTCTCAACGTTCAGCAGGCAATGAACCGCCGATGGATTTT
GACGATGATATCCCGTTCCTTGGGTTTGGTTATGGCGTATGTCGCAAGGCAATCTACGCCGTTTCGTAA
ATGGCTTCACGCGGTGTTAACAAAGTTATCTTAGTTGGCCATCTCGGTCAGGATCCTGAAATTCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATGACATTAGCGACCTCTGAAACCTGGCGGGATAAGCAAAGTGGTGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATTTTCGGGAAACTCGCTGAAGTCGCTGGCGAATATCTTCGCAAAGGCTCTCAGGTTTACATT
GAAGGTTCATTACAAACGCGTAAATGGGCTGATCAGGCTGGGGTAGAACGCTATACGACTGAAGTTGTCGTTAACGTTGG
CGGCACATTGCAGATGCTAGGCTCTCGTCCTAACGCTGGAAGTAACAACCAAAGTGCAGCCAGTACTGCATGGGGAAAAC
CTCAGCAGCCAGTTGCACCGGCGCAGAGTGGTCCCCCTCAGTCTCAACGTTCAGCAGGCAATGAACCGCCGATGGATTTT
GACGATGATATCCCGTTCCTTGGGTTTGGTTATGGCGTATGTCGCAAGGCAATCTACGCCGTTTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.797 |
97.253 |
0.659 |
| ssb | Glaesserella parasuis strain SC1401 |
51.381 |
99.451 |
0.511 |
| ssb | Neisseria meningitidis MC58 |
44.318 |
96.703 |
0.429 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
96.703 |
0.429 |