Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ID12_RS15940 Genome accession   NZ_CP009108
Coordinates   3163605..3163898 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain GR-8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158605..3168898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS15890 (ID12_16535) sinR 3158764..3159099 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ID12_RS15895 (ID12_16540) tasA 3159167..3159967 (-) 801 WP_035390805.1 biofilm matrix protein TasA -
  ID12_RS15900 (ID12_16545) sipW 3160026..3160598 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ID12_RS15905 (ID12_16550) tapA 3160648..3161175 (-) 528 WP_050827403.1 amyloid fiber anchoring/assembly protein TapA -
  ID12_RS15910 (ID12_16555) - 3161428..3161754 (+) 327 WP_048001387.1 DUF3889 domain-containing protein -
  ID12_RS15915 (ID12_16560) - 3161788..3161988 (-) 201 WP_046343970.1 YqzE family protein -
  ID12_RS15920 (ID12_16565) - 3162049..3162432 (-) 384 WP_050827405.1 competence type IV pilus minor pilin ComGG -
  ID12_RS15925 (ID12_16570) comGF 3162429..3162926 (-) 498 WP_046343974.1 competence type IV pilus minor pilin ComGF -
  ID12_RS15930 (ID12_16575) comGE 3162868..3163182 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  ID12_RS15935 (ID12_16580) comGD 3163166..3163612 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  ID12_RS15940 (ID12_16585) comGC 3163605..3163898 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ID12_RS15945 (ID12_16590) comGB 3163915..3164955 (-) 1041 WP_035390815.1 competence type IV pilus assembly protein ComGB -
  ID12_RS15950 (ID12_16595) comGA 3164936..3166006 (-) 1071 WP_035390817.1 competence type IV pilus ATPase ComGA Machinery gene
  ID12_RS15955 (ID12_16600) - 3166464..3167336 (-) 873 WP_035390819.1 STAS domain-containing protein -
  ID12_RS15965 (ID12_16615) - 3167562..3167942 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ID12_RS15970 (ID12_16620) - 3168155..3168397 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=126881 ID12_RS15940 WP_008342186.1 3163605..3163898(-) (comGC) [Bacillus altitudinis strain GR-8]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=126881 ID12_RS15940 WP_008342186.1 3163605..3163898(-) (comGC) [Bacillus altitudinis strain GR-8]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTTATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment