Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ID12_RS15890 | Genome accession | NZ_CP009108 |
| Coordinates | 3158764..3159099 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain GR-8 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3153764..3164099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ID12_RS15875 (ID12_16515) | gcvT | 3154240..3155337 (-) | 1098 | WP_019743009.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ID12_RS15880 (ID12_16520) | - | 3155899..3157569 (+) | 1671 | WP_050827401.1 | DEAD/DEAH box helicase | - |
| ID12_RS15885 (ID12_16525) | - | 3157584..3158381 (+) | 798 | WP_035390802.1 | YqhG family protein | - |
| ID12_RS19140 | - | 3158566..3158730 (+) | 165 | WP_080934047.1 | anti-repressor SinI family protein | - |
| ID12_RS15890 (ID12_16535) | sinR | 3158764..3159099 (+) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| ID12_RS15895 (ID12_16540) | tasA | 3159167..3159967 (-) | 801 | WP_035390805.1 | biofilm matrix protein TasA | - |
| ID12_RS15900 (ID12_16545) | sipW | 3160026..3160598 (-) | 573 | WP_017357979.1 | signal peptidase I SipW | - |
| ID12_RS15905 (ID12_16550) | tapA | 3160648..3161175 (-) | 528 | WP_050827403.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ID12_RS15910 (ID12_16555) | - | 3161428..3161754 (+) | 327 | WP_048001387.1 | DUF3889 domain-containing protein | - |
| ID12_RS15915 (ID12_16560) | - | 3161788..3161988 (-) | 201 | WP_046343970.1 | YqzE family protein | - |
| ID12_RS15920 (ID12_16565) | - | 3162049..3162432 (-) | 384 | WP_050827405.1 | competence type IV pilus minor pilin ComGG | - |
| ID12_RS15925 (ID12_16570) | comGF | 3162429..3162926 (-) | 498 | WP_046343974.1 | competence type IV pilus minor pilin ComGF | - |
| ID12_RS15930 (ID12_16575) | comGE | 3162868..3163182 (-) | 315 | WP_007501227.1 | competence type IV pilus minor pilin ComGE | - |
| ID12_RS15935 (ID12_16580) | comGD | 3163166..3163612 (-) | 447 | WP_017357985.1 | competence type IV pilus minor pilin ComGD | - |
| ID12_RS15940 (ID12_16585) | comGC | 3163605..3163898 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=126880 ID12_RS15890 WP_017357978.1 3158764..3159099(+) (sinR) [Bacillus altitudinis strain GR-8]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=126880 ID12_RS15890 WP_017357978.1 3158764..3159099(+) (sinR) [Bacillus altitudinis strain GR-8]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |