Detailed information NTG0126350

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSAKL28_RS07540
• Genome accession: NZ_CP009048
• Coordinates: 1614766..1616988 (+)
• Length: 740 a.a.
• NCBI ID: WP_038608552.1
• Uniprot ID: A0A077FBJ1
• Organism: Pseudomonas alkylphenolica strain KL28
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1609766..1621988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSAKL28_RS07520 (PSAKL28_14710)	-	1611630..1612253 (+)	624	WP_038608540.1	glutathione S-transferase family protein	-
PSAKL28_RS07525 (PSAKL28_14720)	-	1612392..1613336 (+)	945	WP_038608543.1	ABC transporter ATP-binding protein	-
PSAKL28_RS07530 (PSAKL28_14730)	-	1613333..1614112 (+)	780	WP_038608546.1	ABC transporter permease	-
PSAKL28_RS07535 (PSAKL28_14740)	-	1614080..1614622 (-)	543	WP_038608549.1	DUF2062 domain-containing protein	-
PSAKL28_RS07540 (PSAKL28_14750)	comA	1614766..1616988 (+)	2223	WP_038608552.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSAKL28_RS07545 (PSAKL28_14760)	exbB	1617059..1617694 (+)	636	WP_038608555.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSAKL28_RS07550 (PSAKL28_14770)	-	1617691..1618122 (+)	432	WP_038608558.1	biopolymer transporter ExbD	-
PSAKL28_RS07555 (PSAKL28_14780)	lpxK	1618122..1619132 (+)	1011	WP_038608561.1	tetraacyldisaccharide 4'-kinase	-
PSAKL28_RS07560 (PSAKL28_14790)	-	1619171..1619356 (+)	186	WP_003247142.1	Trm112 family protein	-
PSAKL28_RS07565 (PSAKL28_14800)	kdsB	1619353..1620117 (+)	765	WP_038608567.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSAKL28_RS07570 (PSAKL28_14810)	-	1620117..1620581 (+)	465	WP_038608570.1	low molecular weight protein-tyrosine-phosphatase	-
PSAKL28_RS07575 (PSAKL28_14820)	murB	1620578..1621597 (+)	1020	WP_038608574.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 80351.16 Da
• Isoelectric Point: 10.1591

>NTDB_id=126350 PSAKL28_RS07540 WP_038608552.1 1614766..1616988(+) (comA) [Pseudomonas alkylphenolica strain KL28]
MRTGMLALALGLLCLRVLPVLPSVGIIVLMALVGLCCLAWRVRPCGLFLLGLCWACLSAQQALDDRLAPALDGRTLWLEG
RVVGLPAHNGRSVRFELDAAQSRRAQLPQRMQLSWFDGPQVNSGERWRLAVTLKRPHGLLNPHGPDREAALLARRIGATG
NVKVGERLTPAEGAWRDGLRQRLSGVDAQGREAELVALVLGDGAGLARDSWQTLQATGTVHLLVISGQHIGLLAGLVYGL
IAGLARLGLWPQALPWLPWACGAAFAAALGYGLLAGFQVPVQRACVMLAVVLLWRLRYRHLGVGLPLLLALNAVLLWEPL
ASLLPGFWLSFAAVAVLLFTFSGRLGAWSPWRAWGRAQWLIALGLLPVLIALGLPVSLSAPLANLFAVPWISLAVLPLAL
PGTLLLPVPFVGQGLLWLAGGLLDVLFSLLGQLAQWQPPWTPESLSWPLWALLWLGTVLLLLPRGLPMRVLGWPLLLLAA
FAPRERVPHGQVEVWQLDVGQGLAFVLRTRQHTMLYDAGPALGEHDLGERIVLPSLRKLGVQALDLMLLSHADADHAGGA
LAIKRGLQVHQVRGGETARLAPALQAQPCVSGERWQWDGVNFSVWQWQGGRDSNQDSCVLLVEAGGERLLLTGDLDAAGE
RAWLGDWQATRLDWLQAPHHGSRTSSSQALLAATAPRGVLISRGRYNAFGHPHAEVMERYRINGIEAFDSAVHGALRLRL
GTFGEPLGLRSQRRFWRDPS

Nucleotide

• Length: 2223 bp

>NTDB_id=126350 PSAKL28_RS07540 WP_038608552.1 1614766..1616988(+) (comA) [Pseudomonas alkylphenolica strain KL28]
ATGCGCACAGGGATGTTAGCGCTGGCACTGGGCCTGCTGTGCCTGCGTGTCTTACCGGTTTTGCCATCGGTCGGGATCAT
CGTTTTGATGGCCTTGGTTGGGCTGTGCTGCCTGGCTTGGCGAGTTCGTCCTTGCGGTCTGTTCCTGCTCGGCCTGTGCT
GGGCCTGTCTGTCGGCACAGCAGGCGCTGGATGATCGCCTGGCGCCTGCGCTCGATGGTCGTACGTTGTGGCTGGAGGGC
AGGGTGGTCGGCTTGCCCGCGCACAATGGCCGCTCAGTTCGATTCGAACTCGATGCCGCTCAATCTCGCCGTGCGCAGTT
GCCGCAGCGCATGCAACTGAGCTGGTTTGACGGGCCGCAGGTGAACAGTGGCGAGCGCTGGCGGCTGGCGGTCACCCTCA
AGCGTCCGCATGGTTTGCTCAATCCTCATGGCCCGGATCGCGAGGCCGCCTTACTGGCCCGGCGTATCGGCGCCACCGGT
AACGTCAAAGTCGGGGAACGGCTGACGCCTGCCGAGGGTGCCTGGCGCGACGGGTTGCGCCAGCGCTTGTCGGGTGTGGA
TGCCCAGGGCCGCGAGGCAGAGCTGGTTGCCCTGGTACTGGGCGATGGCGCGGGCCTGGCCCGGGACAGCTGGCAAACGC
TGCAGGCGACCGGCACCGTGCACTTGCTGGTGATCTCCGGGCAGCATATCGGCCTGCTGGCCGGGCTGGTCTATGGTCTG
ATTGCCGGTTTGGCGCGGCTTGGGCTTTGGCCGCAGGCCTTGCCTTGGCTGCCCTGGGCCTGCGGCGCAGCCTTTGCCGC
CGCGCTGGGTTATGGCTTGCTGGCCGGTTTTCAGGTGCCGGTCCAGCGCGCCTGCGTGATGCTGGCGGTAGTGCTGCTCT
GGCGTTTGCGCTATCGCCACCTGGGGGTGGGCTTACCGTTGTTGCTGGCACTCAATGCCGTGTTGTTGTGGGAGCCATTG
GCCAGTCTGCTGCCAGGGTTCTGGCTGTCATTCGCCGCGGTTGCGGTGCTGCTTTTCACGTTCAGTGGCCGGCTCGGCGC
CTGGAGCCCCTGGCGCGCGTGGGGGCGGGCGCAGTGGTTGATCGCCTTGGGATTGCTGCCCGTGTTGATCGCATTGGGGT
TGCCAGTCAGTCTCAGTGCGCCGTTGGCCAACCTGTTCGCCGTGCCCTGGATCAGCCTGGCGGTGCTGCCATTGGCATTG
CCGGGAACCCTGCTGCTGCCCGTGCCGTTTGTGGGGCAGGGGTTGCTCTGGCTGGCGGGTGGGCTGCTTGACGTGCTGTT
CAGTCTGCTTGGGCAACTGGCCCAATGGCAGCCGCCCTGGACACCGGAGTCTTTGTCATGGCCACTCTGGGCCTTGCTCT
GGTTGGGGACAGTGTTGCTGTTACTGCCCCGTGGCTTGCCAATGCGTGTGCTCGGCTGGCCATTGCTCCTGCTGGCTGCC
TTTGCGCCGCGAGAGCGGGTACCGCACGGCCAGGTGGAGGTCTGGCAGCTGGATGTCGGCCAGGGCCTGGCGTTCGTGCT
GCGCACCCGGCAGCACACGATGCTGTACGACGCCGGGCCTGCACTGGGTGAGCATGACCTGGGCGAGCGGATCGTGTTGC
CGAGCTTGCGCAAGTTGGGGGTGCAAGCGCTGGATCTGATGTTGCTCAGTCATGCCGATGCCGATCATGCGGGCGGCGCC
CTGGCGATCAAGCGCGGCCTGCAAGTGCATCAGGTGCGCGGCGGAGAAACAGCGCGCCTGGCGCCAGCTTTGCAGGCGCA
GCCCTGTGTCAGCGGCGAGCGCTGGCAGTGGGACGGCGTGAACTTTTCGGTCTGGCAATGGCAGGGCGGTCGCGACAGTA
ACCAGGACTCCTGCGTACTGCTGGTCGAGGCCGGTGGCGAGCGGTTGTTGCTTACCGGCGATCTTGATGCCGCTGGCGAG
CGGGCCTGGCTCGGTGATTGGCAAGCCACCCGGCTCGACTGGTTGCAAGCGCCGCACCATGGCAGTCGTACCTCGTCCAG
CCAGGCGTTGCTGGCCGCCACGGCGCCGCGTGGCGTATTGATTTCCAGGGGGCGTTACAACGCATTCGGCCATCCCCATG
CCGAGGTCATGGAACGCTACCGGATAAATGGCATCGAAGCCTTCGACAGTGCCGTGCACGGTGCGCTGCGCCTGCGTCTT
GGGACTTTCGGCGAGCCTCTGGGGCTGCGCAGCCAACGACGCTTCTGGCGAGACCCGAGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-461)

• Domain of unknown function (DUF4131) (DUF4131) (24-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

3D structure

• AlphaFold DB: A0A077FBJ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.501	97.162	0.588
comA	Ralstonia pseudosolanacearum GMI1000	35.025	100	0.373