Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSAKL28_RS07545 Genome accession   NZ_CP009048
Coordinates   1617059..1617694 (+) Length   211 a.a.
NCBI ID   WP_038608555.1    Uniprot ID   -
Organism   Pseudomonas alkylphenolica strain KL28     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612059..1622694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSAKL28_RS07525 (PSAKL28_14720) - 1612392..1613336 (+) 945 WP_038608543.1 ABC transporter ATP-binding protein -
  PSAKL28_RS07530 (PSAKL28_14730) - 1613333..1614112 (+) 780 WP_038608546.1 ABC transporter permease -
  PSAKL28_RS07535 (PSAKL28_14740) - 1614080..1614622 (-) 543 WP_038608549.1 DUF2062 domain-containing protein -
  PSAKL28_RS07540 (PSAKL28_14750) comA 1614766..1616988 (+) 2223 WP_038608552.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSAKL28_RS07545 (PSAKL28_14760) exbB 1617059..1617694 (+) 636 WP_038608555.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSAKL28_RS07550 (PSAKL28_14770) - 1617691..1618122 (+) 432 WP_038608558.1 biopolymer transporter ExbD -
  PSAKL28_RS07555 (PSAKL28_14780) lpxK 1618122..1619132 (+) 1011 WP_038608561.1 tetraacyldisaccharide 4'-kinase -
  PSAKL28_RS07560 (PSAKL28_14790) - 1619171..1619356 (+) 186 WP_003247142.1 Trm112 family protein -
  PSAKL28_RS07565 (PSAKL28_14800) kdsB 1619353..1620117 (+) 765 WP_038608567.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSAKL28_RS07570 (PSAKL28_14810) - 1620117..1620581 (+) 465 WP_038608570.1 low molecular weight protein-tyrosine-phosphatase -
  PSAKL28_RS07575 (PSAKL28_14820) murB 1620578..1621597 (+) 1020 WP_038608574.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.04 Da        Isoelectric Point: 6.8759

>NTDB_id=126351 PSAKL28_RS07545 WP_038608555.1 1617059..1617694(+) (exbB) [Pseudomonas alkylphenolica strain KL28]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWLWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=126351 PSAKL28_RS07545 WP_038608555.1 1617059..1617694(+) (exbB) [Pseudomonas alkylphenolica strain KL28]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTCTGGACCCTGCGCGCCAGCCGGGTCACTCCACCGCACCTGCTGGGTCAGGTATGGCTGTGGATCAAAGACA
AGCAGCTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAGATCCTCGCCGCGGGCCTGGCTAAC
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCAGCCCGGGTAATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATTGCCGCGATGGCACCGTTGCTCGGTCTGCTCGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCATTCATGGGCACCGGCATGACCACCAATGCCGCGGTGTTGGCCGGCGGTATCTCGAAAGCATTGATCACCACCGCA
GCCGGTCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGTATCGACGAACTGGTGGTCGGTAT
GGAGCAAGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment