Detailed information NTG0126290

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IR04_RS18520
• Genome accession: NZ_CP009042
• Coordinates: 2928655..2929662 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O1 biovar El Tor strain FJ147
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2923655..2934662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IR04_RS18495 (IR04_18415)	rraA	2924230..2924745 (-)	516	WP_045788701.1	ribonuclease E activity regulator RraA	-
IR04_RS18500 (IR04_18420)	-	2924820..2925737 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IR04_RS18505 (IR04_18425)	hslU	2925841..2927172 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
IR04_RS18510 (IR04_18430)	hslV	2927238..2927795 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
IR04_RS18515 (IR04_18435)	-	2927932..2928483 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
IR04_RS18520 (IR04_18440)	cytR	2928655..2929662 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
IR04_RS18525 (IR04_18445)	priA	2929968..2932172 (-)	2205	WP_001247858.1	primosomal protein N'	-
IR04_RS18530 (IR04_18450)	rpmE	2932427..2932645 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
IR04_RS18535 (IR04_18455)	-	2932953..2934230 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
IR04_RS18540 (IR04_18460)	metJ	2934341..2934658 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=126290 IR04_RS18520 WP_000224452.1 2928655..2929662(-) (cytR) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=126290 IR04_RS18520 WP_000224452.1 2928655..2929662(-) (cytR) [Vibrio cholerae O1 biovar El Tor strain FJ147]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904