Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ID09_RS08450 Genome accession   NZ_CP008921
Coordinates   1732211..1732855 (+) Length   214 a.a.
NCBI ID   WP_024381659.1    Uniprot ID   A0A075SFG7
Organism   Streptococcus suis 6407     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727211..1737855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS08435 (ID09_08675) - 1728348..1730021 (-) 1674 WP_024381656.1 site-specific DNA-methyltransferase -
  ID09_RS08440 (ID09_08685) - 1730218..1730766 (-) 549 WP_029693864.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  ID09_RS11365 (ID09_08690) - 1730788..1731948 (-) 1161 WP_024381658.1 FRG domain-containing protein -
  ID09_RS08450 (ID09_08695) cclA/cilC 1732211..1732855 (+) 645 WP_024381659.1 prepilin peptidase Machinery gene
  ID09_RS08455 (ID09_08700) - 1732963..1734423 (+) 1461 WP_014638479.1 nicotinate phosphoribosyltransferase -
  ID09_RS08460 (ID09_08705) nadE 1734436..1735260 (+) 825 WP_024381660.1 ammonia-dependent NAD(+) synthetase -
  ID09_RS08465 (ID09_08710) - 1736134..1736661 (-) 528 WP_002942846.1 VanZ family protein -
  ID09_RS08470 (ID09_08715) rlmN 1736658..1737770 (-) 1113 WP_004194597.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24277.40 Da        Isoelectric Point: 8.4760

>NTDB_id=125708 ID09_RS08450 WP_024381659.1 1732211..1732855(+) (cclA/cilC) [Streptococcus suis 6407]
MKTIILFFLGASIGSFLGLVIDRFPEQSIITPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKISYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAIWLVFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFTIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=125708 ID09_RS08450 WP_024381659.1 1732211..1732855(+) (cclA/cilC) [Streptococcus suis 6407]
ATGAAGACAATTATTCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCACCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAAATATCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTATCTGGCTTGTTTTTACTTTTATTGCTCTGATACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTAACCGAAAAATGGCAGATTAATATTGGTTCTGGTGATTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCACTATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTCTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SFG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.585

99.065

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae D39

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae R6

48.058

96.262

0.463
  cclA/cilC Streptococcus pneumoniae TIGR4

47.087

96.262

0.453
  cclA/cilC Streptococcus mitis NCTC 12261

44.811

99.065

0.444

Multiple sequence alignment