Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ID09_RS06395 Genome accession   NZ_CP008921
Coordinates   1314015..1314956 (-) Length   313 a.a.
NCBI ID   WP_024381435.1    Uniprot ID   A0A075SIN6
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1309015..1319956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS06370 (ID09_06555) prsA 1309141..1310121 (-) 981 WP_024390551.1 peptidylprolyl isomerase PrsA -
  ID09_RS06375 (ID09_06560) - 1310182..1310901 (-) 720 WP_009910106.1 O-methyltransferase -
  ID09_RS06380 (ID09_06565) - 1310976..1311524 (-) 549 WP_002938103.1 DUF6630 family protein -
  ID09_RS06385 (ID09_06570) - 1311540..1311980 (-) 441 WP_024381433.1 hypothetical protein -
  ID09_RS06390 (ID09_06575) pepF 1311982..1313784 (-) 1803 WP_024381434.1 oligoendopeptidase F Regulator
  ID09_RS06395 (ID09_06580) coiA 1314015..1314956 (-) 942 WP_024381435.1 competence protein CoiA Machinery gene
  ID09_RS06400 (ID09_06585) metG 1315017..1317020 (-) 2004 WP_024390552.1 methionine--tRNA ligase -
  ID09_RS06405 (ID09_06590) - 1317173..1317766 (+) 594 WP_015646699.1 DUF1361 domain-containing protein -
  ID09_RS06410 (ID09_06595) - 1318066..1319103 (+) 1038 WP_024381437.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36249.85 Da        Isoelectric Point: 8.0997

>NTDB_id=125705 ID09_RS06395 WP_024381435.1 1314015..1314956(-) (coiA) [Streptococcus suis 6407]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGFQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRALPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=125705 ID09_RS06395 WP_024381435.1 1314015..1314956(-) (coiA) [Streptococcus suis 6407]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCTGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGCTTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428

Multiple sequence alignment