Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HZ99_RS13935 | Genome accession | NZ_CP008896 |
| Coordinates | 3144341..3144856 (-) | Length | 171 a.a. |
| NCBI ID | WP_017849542.1 | Uniprot ID | A0A6I3WGC1 |
| Organism | Pseudomonas fluorescens strain UK4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3139341..3149856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZ99_RS13910 | - | 3140309..3140935 (+) | 627 | WP_144243180.1 | hypothetical protein | - |
| HZ99_RS13920 (HZ99_14270) | - | 3140976..3142126 (+) | 1151 | WP_088500423.1 | IS3 family transposase | - |
| HZ99_RS13925 | - | 3142142..3142900 (-) | 759 | WP_038448078.1 | hypothetical protein | - |
| HZ99_RS13930 (HZ99_14280) | - | 3142902..3143972 (-) | 1071 | WP_235205526.1 | site-specific integrase | - |
| HZ99_RS13935 (HZ99_14285) | ssb | 3144341..3144856 (-) | 516 | WP_017849542.1 | single-stranded DNA-binding protein | Machinery gene |
| HZ99_RS13940 (HZ99_14290) | - | 3144866..3146260 (-) | 1395 | WP_038443736.1 | MFS transporter | - |
| HZ99_RS13945 (HZ99_14295) | uvrA | 3146441..3149275 (+) | 2835 | WP_038443737.1 | excinuclease ABC subunit UvrA | - |
| HZ99_RS13950 (HZ99_14300) | bfr | 3149343..3149807 (-) | 465 | WP_029299402.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18989.15 Da Isoelectric Point: 5.9455
>NTDB_id=125523 HZ99_RS13935 WP_017849542.1 3144341..3144856(-) (ssb) [Pseudomonas fluorescens strain UK4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=125523 HZ99_RS13935 WP_017849542.1 3144341..3144856(-) (ssb) [Pseudomonas fluorescens strain UK4]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATTGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACGGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGATCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCGCAACCGGCCGCC
GACTTCGACAGCTTTGATGACGATATCCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAGATTGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACGGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAAGGCGATCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCGCAACCGGCCGCC
GACTTCGACAGCTTTGATGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.286 |
100 |
0.596 |
| ssb | Neisseria gonorrhoeae MS11 |
48.315 |
100 |
0.503 |
| ssb | Glaesserella parasuis strain SC1401 |
44.792 |
100 |
0.503 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.48 |