Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HZ99_RS08980 Genome accession   NZ_CP008896
Coordinates   2068123..2070378 (-) Length   751 a.a.
NCBI ID   WP_115284338.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain UK4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2063123..2075378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS08945 (HZ99_09205) murB 2063526..2064545 (-) 1020 WP_038442494.1 UDP-N-acetylmuramate dehydrogenase -
  HZ99_RS08950 (HZ99_09210) - 2064542..2065006 (-) 465 WP_038442495.1 low molecular weight protein-tyrosine-phosphatase -
  HZ99_RS08955 (HZ99_09215) kdsB 2065006..2065770 (-) 765 WP_038442496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HZ99_RS08960 (HZ99_09220) - 2065767..2065952 (-) 186 WP_003174668.1 Trm112 family protein -
  HZ99_RS08965 (HZ99_09225) lpxK 2065977..2066987 (-) 1011 WP_038442497.1 tetraacyldisaccharide 4'-kinase -
  HZ99_RS08970 (HZ99_09230) - 2066987..2067415 (-) 429 WP_038442498.1 ExbD/TolR family protein -
  HZ99_RS08975 (HZ99_09235) exbB 2067412..2068047 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HZ99_RS08980 (HZ99_09240) comA 2068123..2070378 (-) 2256 WP_115284338.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HZ99_RS08985 (HZ99_09245) - 2070515..2071030 (+) 516 WP_038442499.1 DUF2062 domain-containing protein -
  HZ99_RS08990 (HZ99_09250) - 2071264..2074017 (+) 2754 WP_038442500.1 response regulator -
  HZ99_RS08995 (HZ99_09255) - 2074112..2075101 (+) 990 WP_038442501.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 82107.68 Da        Isoelectric Point: 11.3511

>NTDB_id=125516 HZ99_RS08980 WP_115284338.1 2068123..2070378(-) (comA) [Pseudomonas fluorescens strain UK4]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPMVVLMLLPFRTYPLAFFLLGLAWACFSAQRALDDRLAPALDGQTRWLEG
RVSELVQQGDGVVRFQLSDSQSRRDRLPRRIRVTWQGGPQVRSGERWRLAVTLKRPSGRLNFHGFDQEAWLLAQRVGAIG
SVKDGQRLAPARHAWRDGIRQRLLAVDAQGREPGLAALVLGDGSGLAAGDWRILQDTGTVHLLVISGQHIGLLSGLIYGL
VAAMARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFAVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNAVLLLEPL
ASLQPGFWLSFAAVAVLVLTFGGRLGPWRAWQAWTRAQWLIAIGLFPLLLILGLPISLTAPLANLFAVPWISLLVLPLAL
AGTLLLAVPWLGSGLLWLAGGALDGLFKALAILAGRVPAWMPAEVPVGYWLLSLLGTLLLLMPKGVPFRLLGWPMLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHALLYDAGPRQGDFDLGERVVLPALRKLGVSQLDLMLLSHADADHAGGA
VAVALGLPVKRIVGGEIQGLPAFLDTRACVSGEQWEWDGVMFRLWQWADARNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLTTPLAVATDWLQAPHHGSRSSSSWPFVQQLAPKAVLISRGRGNSFGHPHPQVLARYQHLRSAIYDSAEQGAVRLRL
GAFQAPVTARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=125516 HZ99_RS08980 WP_115284338.1 2068123..2070378(-) (comA) [Pseudomonas fluorescens strain UK4]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCCGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGATGGTGGTGTTGATGTTGCTGCCGTTTCGTACTTATCCGCTGGCGTTTTTCCTGCTGGGCCTGGCGT
GGGCCTGTTTCAGCGCGCAGCGGGCACTGGACGACCGGCTCGCTCCGGCCCTGGATGGGCAGACCCGTTGGCTGGAAGGG
CGCGTCAGCGAGCTGGTGCAGCAGGGCGATGGGGTGGTGCGTTTTCAGTTGAGCGACAGCCAGTCGCGCCGGGACCGGCT
ACCCCGGCGTATCCGTGTGACGTGGCAGGGCGGCCCGCAAGTGCGCAGTGGTGAGCGCTGGCGTTTGGCCGTTACCCTCA
AGCGCCCCTCTGGACGGCTGAATTTTCATGGCTTCGACCAGGAGGCCTGGCTATTGGCCCAGCGTGTGGGGGCGATCGGC
TCGGTCAAGGACGGCCAGCGCCTGGCACCGGCCCGGCATGCCTGGCGCGACGGAATCCGCCAGCGGCTACTGGCAGTCGA
CGCCCAGGGCCGCGAACCGGGGCTGGCCGCACTGGTGCTGGGCGACGGCTCCGGCTTGGCAGCCGGGGATTGGCGCATTT
TGCAGGACACCGGCACCGTGCATCTATTGGTCATCTCCGGTCAGCATATCGGCCTGTTGTCGGGGTTGATCTATGGGCTG
GTGGCCGCAATGGCCCGCTATGGTTGCTGGCCCAGGCGCTTGCCCTGGCTGCCCTGGGCCTGTGGCCTGGCATTTGCTGC
GGCTCTGGCTTATGGCTTGCTGGCTGGTTTTGCCGTGCCGGTGCAACGGGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGCCTGCGGTTTCGCCACCTGGGGGTTTGGTGGCCACTGCTGCTGGCCCTGAATGCGGTGTTGCTCCTTGAACCATTG
GCCAGTCTGCAACCGGGCTTCTGGCTGTCATTTGCCGCCGTGGCCGTGTTGGTGCTGACCTTTGGCGGCCGTTTGGGACC
ATGGCGTGCATGGCAGGCCTGGACCCGTGCCCAATGGCTGATCGCTATCGGGCTGTTTCCACTGCTGCTGATTCTGGGCC
TGCCCATCAGCTTGACTGCGCCGCTGGCCAATCTGTTCGCCGTGCCTTGGATCAGCCTGCTGGTGCTGCCGCTGGCGCTG
GCGGGCACGCTGTTGCTGGCGGTACCGTGGCTGGGCAGTGGCTTGTTGTGGCTGGCCGGTGGTGCGCTGGATGGATTGTT
CAAGGCGTTGGCAATACTGGCCGGGCGTGTACCGGCCTGGATGCCTGCCGAGGTGCCCGTTGGCTACTGGTTGCTCAGTT
TGTTGGGGACTTTGTTGTTATTGATGCCCAAGGGCGTTCCTTTTCGCCTGCTGGGTTGGCCCATGTTGCTGCTGGCGGTG
TTCCCGCCCCGAGAATCGATCCCATTGGGCCAGGTGGCGGTGGAGCAACTGGATGTCGGCCAGGGCCTCTCGATAGTGTT
ACGCACCCGCAACCATGCGCTGTTGTATGACGCCGGGCCACGGCAGGGGGATTTCGACCTCGGTGAGCGTGTGGTATTGC
CGGCGCTGCGCAAGCTGGGGGTTAGCCAGTTGGATTTGATGCTGCTCAGTCACGCCGACGCTGATCACGCAGGGGGCGCC
GTGGCGGTAGCGCTCGGGTTGCCGGTCAAGCGGATAGTGGGCGGGGAAATCCAGGGGCTGCCAGCGTTTCTCGATACCCG
GGCCTGTGTCAGCGGTGAACAGTGGGAGTGGGACGGCGTAATGTTCCGGCTGTGGCAATGGGCGGATGCCCGCAACGGCA
ACGCGAAGTCTTGTGTGTTGCAGGTCCAGGCCAATGGTGAACGGCTGTTACTGACCGGCGATATCGATCGCGAGGCCGAG
CGAGCCTTGCTCACTACGCCCTTGGCGGTCGCCACGGATTGGCTGCAAGCCCCCCATCATGGCAGCCGCAGTTCATCGTC
GTGGCCGTTTGTCCAGCAACTGGCCCCCAAGGCAGTGCTGATTTCCCGCGGGCGTGGCAATTCCTTTGGCCATCCGCACC
CGCAGGTGCTGGCGCGTTACCAACATTTGCGCAGCGCCATTTATGACAGCGCCGAACAGGGCGCCGTGCGTTTGCGCCTG
GGAGCTTTCCAGGCTCCGGTGACGGCGCGCAGCCAGCGCCGTTTCTGGCGCGCGCCGGTCATTGACAGTTACCAAAGACC
AGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-662)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.585

95.606

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.61

100

0.361

Multiple sequence alignment