Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HZ99_RS08975 Genome accession   NZ_CP008896
Coordinates   2067412..2068047 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas fluorescens strain UK4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062412..2073047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS08940 (HZ99_09200) - 2062812..2063282 (-) 471 WP_038442493.1 (2Fe-2S)-binding protein -
  HZ99_RS08945 (HZ99_09205) murB 2063526..2064545 (-) 1020 WP_038442494.1 UDP-N-acetylmuramate dehydrogenase -
  HZ99_RS08950 (HZ99_09210) - 2064542..2065006 (-) 465 WP_038442495.1 low molecular weight protein-tyrosine-phosphatase -
  HZ99_RS08955 (HZ99_09215) kdsB 2065006..2065770 (-) 765 WP_038442496.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HZ99_RS08960 (HZ99_09220) - 2065767..2065952 (-) 186 WP_003174668.1 Trm112 family protein -
  HZ99_RS08965 (HZ99_09225) lpxK 2065977..2066987 (-) 1011 WP_038442497.1 tetraacyldisaccharide 4'-kinase -
  HZ99_RS08970 (HZ99_09230) - 2066987..2067415 (-) 429 WP_038442498.1 ExbD/TolR family protein -
  HZ99_RS08975 (HZ99_09235) exbB 2067412..2068047 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HZ99_RS08980 (HZ99_09240) comA 2068123..2070378 (-) 2256 WP_115284338.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HZ99_RS08985 (HZ99_09245) - 2070515..2071030 (+) 516 WP_038442499.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=125515 HZ99_RS08975 WP_029299724.1 2067412..2068047(-) (exbB) [Pseudomonas fluorescens strain UK4]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=125515 HZ99_RS08975 WP_029299724.1 2067412..2068047(-) (exbB) [Pseudomonas fluorescens strain UK4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCTTGTGGACCCTGCGCGCCAGTCGCGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAGCTCAAGGAGCTCCGGGCCAATTCCCCCCTGGGCGAGATTCTCGCTGCGGGCCTTGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCGGCGATGGCGCCGTTGCTCGGTTTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCTTTTACCGGCTCGGGCATGACCACCAACGCCTCGGTACTGGCCGGTGGTATCTCCAAGGCCTTGATCACCACGGCT
GCCGGCCTGATGGTCGGCATCCCGGCCGTGTTTTTCCACCGGTTCCTGCAGCGTCGCATCGATGAATTGGTGGTAGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGGTCCAGGGCGATCGTGACGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment